Gene : AT5G53540 A. thaliana TAIR10
Defline:  (1 of 2) PTHR23074//PTHR23074:SF20 - AAA ATPASE // GH08677P Genomic Order:  4798
Name:  ? AT5G53540 Secondary Identifier:  ? PAC:19668265
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G53540 0.5kb upstream 0.5kb upstream 2452 true Chr5: 21749286-21751737 Arabidopsis thaliana
AT5G53540 0.5kb upstream 0.5kb upstream 500 false Chr5: 21751238-21751737 Arabidopsis thaliana
AT5G53540 0.5kb downstream 0.5kb downstream 2452 true Chr5: 21748786-21751237 Arabidopsis thaliana
AT5G53540 0.5kb downstream 0.5kb downstream 500 false Chr5: 21748786-21749285 Arabidopsis thaliana
AT5G53540 1.0kb upstream 1.0kb upstream 2952 true Chr5: 21749286-21752237 Arabidopsis thaliana
AT5G53540 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21751238-21752237 Arabidopsis thaliana
AT5G53540 1.0kb downstream 1.0kb downstream 2952 true Chr5: 21748286-21751237 Arabidopsis thaliana
AT5G53540 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21748286-21749285 Arabidopsis thaliana
AT5G53540 2.0kb upstream 2.0kb upstream 3952 true Chr5: 21749286-21753237 Arabidopsis thaliana
AT5G53540 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21751238-21753237 Arabidopsis thaliana
AT5G53540 2.0kb downstream 2.0kb downstream 3952 true Chr5: 21747286-21751237 Arabidopsis thaliana
AT5G53540 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21747286-21749285 Arabidopsis thaliana
AT5G53540 5.0kb upstream 5.0kb upstream 6952 true Chr5: 21749286-21756237 Arabidopsis thaliana
AT5G53540 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21751238-21756237 Arabidopsis thaliana
AT5G53540 5.0kb downstream 5.0kb downstream 6952 true Chr5: 21744286-21751237 Arabidopsis thaliana
AT5G53540 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21744286-21749285 Arabidopsis thaliana
AT5G53540 10.0kb upstream 10.0kb upstream 11952 true Chr5: 21749286-21761237 Arabidopsis thaliana
AT5G53540 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21751238-21761237 Arabidopsis thaliana
AT5G53540 10.0kb downstream 10.0kb downstream 11952 true Chr5: 21739286-21751237 Arabidopsis thaliana
AT5G53540 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21739286-21749285 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366544 5261 Brassicaceae View MSA
123838040 5264 Brassicales-Malvales View MSA
124350869 5266 SBM View MSA
124242662 5268 Malvidae View MSA
124050374 5270 Rosid View MSA
123742259 5271 Pentapetalae View MSA
122791564 5272 Eudicot View MSA
122051596 5273 Angiosperm View MSA
123428918 5275 Viridiplantae View MSA
121350518 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.18       High
cufflinks 15.738        
cufflinks 17.824        
cufflinks 17.287        
cufflinks 17.327        
cufflinks 15.093       Low

0 Strain