Gene : GLT1 A. thaliana TAIR10
Primary Identifier:  ? AT5G53460 Defline:  (1 of 1) 1.4.1.14 - Glutamate synthase (NADH) / NADH-glutamate synthase
Genomic Order:  4789 Name:  ? AT5G53460
Secondary Identifier:  ? PAC:19667700
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana GLUGLNSYN-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-3282 Arabidopsis thaliana pathologic  
Athaliana PWY-6963 Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G53460 0.5kb upstream 0.5kb upstream 10365 true Chr5: 21699702-21710066 Arabidopsis thaliana
AT5G53460 0.5kb upstream 0.5kb upstream 500 false Chr5: 21699702-21700201 Arabidopsis thaliana
AT5G53460 0.5kb downstream 0.5kb downstream 10365 true Chr5: 21700202-21710566 Arabidopsis thaliana
AT5G53460 0.5kb downstream 0.5kb downstream 500 false Chr5: 21710067-21710566 Arabidopsis thaliana
AT5G53460 1.0kb upstream 1.0kb upstream 10865 true Chr5: 21699202-21710066 Arabidopsis thaliana
AT5G53460 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21699202-21700201 Arabidopsis thaliana
AT5G53460 1.0kb downstream 1.0kb downstream 10865 true Chr5: 21700202-21711066 Arabidopsis thaliana
AT5G53460 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21710067-21711066 Arabidopsis thaliana
AT5G53460 2.0kb upstream 2.0kb upstream 11865 true Chr5: 21698202-21710066 Arabidopsis thaliana
AT5G53460 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21698202-21700201 Arabidopsis thaliana
AT5G53460 2.0kb downstream 2.0kb downstream 11865 true Chr5: 21700202-21712066 Arabidopsis thaliana
AT5G53460 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21710067-21712066 Arabidopsis thaliana
AT5G53460 5.0kb upstream 5.0kb upstream 14865 true Chr5: 21695202-21710066 Arabidopsis thaliana
AT5G53460 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21695202-21700201 Arabidopsis thaliana
AT5G53460 5.0kb downstream 5.0kb downstream 14865 true Chr5: 21700202-21715066 Arabidopsis thaliana
AT5G53460 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21710067-21715066 Arabidopsis thaliana
AT5G53460 10.0kb upstream 10.0kb upstream 19865 true Chr5: 21690202-21710066 Arabidopsis thaliana
AT5G53460 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21690202-21700201 Arabidopsis thaliana
AT5G53460 10.0kb downstream 10.0kb downstream 19865 true Chr5: 21700202-21720066 Arabidopsis thaliana
AT5G53460 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21710067-21720066 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366728 5261 Brassicaceae View MSA
123832225 5264 Brassicales-Malvales View MSA
124341222 5266 SBM View MSA
124241008 5268 Malvidae View MSA
124067049 5270 Rosid View MSA
123737951 5271 Pentapetalae View MSA
122793648 5272 Eudicot View MSA
122047244 5273 Angiosperm View MSA
121349673 5274 Embryophyte View MSA
123426109 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.185        
cufflinks 28.217        
cufflinks 9.963       Low
cufflinks 41.848     High High
cufflinks 12.451        
cufflinks 30.831     High  

0 Strain