Gene : PMEPCRF A. thaliana TAIR10
Primary Identifier:  ? AT5G53370 Defline:  (1 of 2) PTHR31707:SF8 - PECTINESTERASE/PECTINESTERASE INHIBITOR 34-RELATED
Genomic Order:  4779 Name:  ? AT5G53370
Secondary Identifier:  ? PAC:19666304
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1081 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G53370 0.5kb upstream 0.5kb upstream 2562 true Chr5: 21649532-21652093 Arabidopsis thaliana
AT5G53370 0.5kb upstream 0.5kb upstream 500 false Chr5: 21651594-21652093 Arabidopsis thaliana
AT5G53370 0.5kb downstream 0.5kb downstream 2562 true Chr5: 21649032-21651593 Arabidopsis thaliana
AT5G53370 0.5kb downstream 0.5kb downstream 500 false Chr5: 21649032-21649531 Arabidopsis thaliana
AT5G53370 1.0kb upstream 1.0kb upstream 3062 true Chr5: 21649532-21652593 Arabidopsis thaliana
AT5G53370 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21651594-21652593 Arabidopsis thaliana
AT5G53370 1.0kb downstream 1.0kb downstream 3062 true Chr5: 21648532-21651593 Arabidopsis thaliana
AT5G53370 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21648532-21649531 Arabidopsis thaliana
AT5G53370 2.0kb upstream 2.0kb upstream 4062 true Chr5: 21649532-21653593 Arabidopsis thaliana
AT5G53370 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21651594-21653593 Arabidopsis thaliana
AT5G53370 2.0kb downstream 2.0kb downstream 4062 true Chr5: 21647532-21651593 Arabidopsis thaliana
AT5G53370 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21647532-21649531 Arabidopsis thaliana
AT5G53370 5.0kb upstream 5.0kb upstream 7062 true Chr5: 21649532-21656593 Arabidopsis thaliana
AT5G53370 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21651594-21656593 Arabidopsis thaliana
AT5G53370 5.0kb downstream 5.0kb downstream 7062 true Chr5: 21644532-21651593 Arabidopsis thaliana
AT5G53370 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21644532-21649531 Arabidopsis thaliana
AT5G53370 10.0kb upstream 10.0kb upstream 12062 true Chr5: 21649532-21661593 Arabidopsis thaliana
AT5G53370 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21651594-21661593 Arabidopsis thaliana
AT5G53370 10.0kb downstream 10.0kb downstream 12062 true Chr5: 21639532-21651593 Arabidopsis thaliana
AT5G53370 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21639532-21649531 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377390 5261 Brassicaceae View MSA
123838000 5264 Brassicales-Malvales View MSA
124337628 5266 SBM View MSA
124239188 5268 Malvidae View MSA
124065220 5270 Rosid View MSA
123746199 5271 Pentapetalae View MSA
122794152 5272 Eudicot View MSA
122043800 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 91.985     High High
cufflinks 40.288     High  
cufflinks 30.714     High Low
cufflinks 41.201     High  
cufflinks 38.946     High  
cufflinks 49.729     High  

0 Strain