Sequence Feature Displayer
Ontology Annotation Displayer
2 Pathways
Pathway Identifier | Organism Name | Analysis Method | Analysis Status |
---|---|---|---|
Athaliana PWY-5885 | Arabidopsis thaliana | pathologic | |
Athaliana TRIGLSYN-PWY | Arabidopsis thaliana | pathologic |
Other
20 Flanking Regions
Region Name | Flank Size | Direction | Length | Gene Included? | Chromosome Location | Organism Name |
---|---|---|---|---|---|---|
AT5G53390 0.5kb upstream | 0.5kb | upstream | 3029 | true | Chr5: 21656734-21659762 | Arabidopsis thaliana |
AT5G53390 0.5kb upstream | 0.5kb | upstream | 500 | false | Chr5: 21659263-21659762 | Arabidopsis thaliana |
AT5G53390 0.5kb downstream | 0.5kb | downstream | 3029 | true | Chr5: 21656234-21659262 | Arabidopsis thaliana |
AT5G53390 0.5kb downstream | 0.5kb | downstream | 500 | false | Chr5: 21656234-21656733 | Arabidopsis thaliana |
AT5G53390 1.0kb upstream | 1.0kb | upstream | 3529 | true | Chr5: 21656734-21660262 | Arabidopsis thaliana |
AT5G53390 1.0kb upstream | 1.0kb | upstream | 1000 | false | Chr5: 21659263-21660262 | Arabidopsis thaliana |
AT5G53390 1.0kb downstream | 1.0kb | downstream | 3529 | true | Chr5: 21655734-21659262 | Arabidopsis thaliana |
AT5G53390 1.0kb downstream | 1.0kb | downstream | 1000 | false | Chr5: 21655734-21656733 | Arabidopsis thaliana |
AT5G53390 2.0kb upstream | 2.0kb | upstream | 4529 | true | Chr5: 21656734-21661262 | Arabidopsis thaliana |
AT5G53390 2.0kb upstream | 2.0kb | upstream | 2000 | false | Chr5: 21659263-21661262 | Arabidopsis thaliana |
AT5G53390 2.0kb downstream | 2.0kb | downstream | 4529 | true | Chr5: 21654734-21659262 | Arabidopsis thaliana |
AT5G53390 2.0kb downstream | 2.0kb | downstream | 2000 | false | Chr5: 21654734-21656733 | Arabidopsis thaliana |
AT5G53390 5.0kb upstream | 5.0kb | upstream | 7529 | true | Chr5: 21656734-21664262 | Arabidopsis thaliana |
AT5G53390 5.0kb upstream | 5.0kb | upstream | 5000 | false | Chr5: 21659263-21664262 | Arabidopsis thaliana |
AT5G53390 5.0kb downstream | 5.0kb | downstream | 7529 | true | Chr5: 21651734-21659262 | Arabidopsis thaliana |
AT5G53390 5.0kb downstream | 5.0kb | downstream | 5000 | false | Chr5: 21651734-21656733 | Arabidopsis thaliana |
AT5G53390 10.0kb upstream | 10.0kb | upstream | 12529 | true | Chr5: 21656734-21669262 | Arabidopsis thaliana |
AT5G53390 10.0kb upstream | 10.0kb | upstream | 10000 | false | Chr5: 21659263-21669262 | Arabidopsis thaliana |
AT5G53390 10.0kb downstream | 10.0kb | downstream | 12529 | true | Chr5: 21646734-21659262 | Arabidopsis thaliana |
AT5G53390 10.0kb downstream | 10.0kb | downstream | 10000 | false | Chr5: 21646734-21656733 | Arabidopsis thaliana |
10 Protein Familys
Cluster ID | Method ID | Method Name | Sequence Alignment |
---|---|---|---|
122370180 | 5261 | Brassicaceae | View MSA |
123836949 | 5264 | Brassicales-Malvales | View MSA |
124349292 | 5266 | SBM | View MSA |
124253080 | 5268 | Malvidae | View MSA |
124072353 | 5270 | Rosid | View MSA |
123749646 | 5271 | Pentapetalae | View MSA |
122794217 | 5272 | Eudicot | View MSA |
122046091 | 5273 | Angiosperm | View MSA |
123428993 | 5275 | Viridiplantae | View MSA |
121351027 | 5274 | Embryophyte | View MSA |
6 Rna Seq Expressionss
Analysis Method | Abundance | Low Confidence Limit | High Confidence Limit | Relative Library Expression | Relative Locus Expression |
---|---|---|---|---|---|
cufflinks | 0.133 | Low | High | ||
cufflinks | 0.0 | Not Expressed | Not Expressed | ||
cufflinks | 0.012 | Low | |||
cufflinks | 0.0 | Not Expressed | Not Expressed | ||
cufflinks | 0.013 | Low | |||
cufflinks | 0.0 | Not Expressed | Not Expressed |