Gene : BOB1 A. thaliana TAIR10
Primary Identifier:  ? AT5G53400 Defline:  (1 of 2) PTHR12356:SF3 - NUCLEAR MIGRATION PROTEIN NUDC
Genomic Order:  4782 Name:  ? AT5G53400
Secondary Identifier:  ? PAC:19672350
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0 Pathways

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G53400 0.5kb upstream 0.5kb upstream 2628 true Chr5: 21660945-21663572 Arabidopsis thaliana
AT5G53400 0.5kb upstream 0.5kb upstream 500 false Chr5: 21660945-21661444 Arabidopsis thaliana
AT5G53400 0.5kb downstream 0.5kb downstream 2628 true Chr5: 21661445-21664072 Arabidopsis thaliana
AT5G53400 0.5kb downstream 0.5kb downstream 500 false Chr5: 21663573-21664072 Arabidopsis thaliana
AT5G53400 1.0kb upstream 1.0kb upstream 3128 true Chr5: 21660445-21663572 Arabidopsis thaliana
AT5G53400 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21660445-21661444 Arabidopsis thaliana
AT5G53400 1.0kb downstream 1.0kb downstream 3128 true Chr5: 21661445-21664572 Arabidopsis thaliana
AT5G53400 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21663573-21664572 Arabidopsis thaliana
AT5G53400 2.0kb upstream 2.0kb upstream 4128 true Chr5: 21659445-21663572 Arabidopsis thaliana
AT5G53400 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21659445-21661444 Arabidopsis thaliana
AT5G53400 2.0kb downstream 2.0kb downstream 4128 true Chr5: 21661445-21665572 Arabidopsis thaliana
AT5G53400 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21663573-21665572 Arabidopsis thaliana
AT5G53400 5.0kb upstream 5.0kb upstream 7128 true Chr5: 21656445-21663572 Arabidopsis thaliana
AT5G53400 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21656445-21661444 Arabidopsis thaliana
AT5G53400 5.0kb downstream 5.0kb downstream 7128 true Chr5: 21661445-21668572 Arabidopsis thaliana
AT5G53400 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21663573-21668572 Arabidopsis thaliana
AT5G53400 10.0kb upstream 10.0kb upstream 12128 true Chr5: 21651445-21663572 Arabidopsis thaliana
AT5G53400 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21651445-21661444 Arabidopsis thaliana
AT5G53400 10.0kb downstream 10.0kb downstream 12128 true Chr5: 21661445-21673572 Arabidopsis thaliana
AT5G53400 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21663573-21673572 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374773 5261 Brassicaceae View MSA
123840656 5264 Brassicales-Malvales View MSA
124350152 5266 SBM View MSA
124251491 5268 Malvidae View MSA
124064550 5270 Rosid View MSA
123752804 5271 Pentapetalae View MSA
122796165 5272 Eudicot View MSA
122044213 5273 Angiosperm View MSA
121350395 5274 Embryophyte View MSA
123424343 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.217        
cufflinks 27.724        
cufflinks 14.379       Low
cufflinks 32.699     High High
cufflinks 15.375        
cufflinks 32.923     High High

0 Strain