Gene : SPCH A. thaliana TAIR10
Primary Identifier:  ? AT5G53210 Defline:  (1 of 1) PTHR11514:SF58 - TRANSCRIPTION FACTOR SPEECHLESS
Genomic Order:  4763 Name:  ? AT5G53210
Secondary Identifier:  ? PAC:19666297
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0 Pathways

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G53210 0.5kb upstream 0.5kb upstream 2836 true Chr5: 21586606-21589441 Arabidopsis thaliana
AT5G53210 0.5kb upstream 0.5kb upstream 500 false Chr5: 21588942-21589441 Arabidopsis thaliana
AT5G53210 0.5kb downstream 0.5kb downstream 2836 true Chr5: 21586106-21588941 Arabidopsis thaliana
AT5G53210 0.5kb downstream 0.5kb downstream 500 false Chr5: 21586106-21586605 Arabidopsis thaliana
AT5G53210 1.0kb upstream 1.0kb upstream 3336 true Chr5: 21586606-21589941 Arabidopsis thaliana
AT5G53210 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21588942-21589941 Arabidopsis thaliana
AT5G53210 1.0kb downstream 1.0kb downstream 3336 true Chr5: 21585606-21588941 Arabidopsis thaliana
AT5G53210 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21585606-21586605 Arabidopsis thaliana
AT5G53210 2.0kb upstream 2.0kb upstream 4336 true Chr5: 21586606-21590941 Arabidopsis thaliana
AT5G53210 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21588942-21590941 Arabidopsis thaliana
AT5G53210 2.0kb downstream 2.0kb downstream 4336 true Chr5: 21584606-21588941 Arabidopsis thaliana
AT5G53210 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21584606-21586605 Arabidopsis thaliana
AT5G53210 5.0kb upstream 5.0kb upstream 7336 true Chr5: 21586606-21593941 Arabidopsis thaliana
AT5G53210 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21588942-21593941 Arabidopsis thaliana
AT5G53210 5.0kb downstream 5.0kb downstream 7336 true Chr5: 21581606-21588941 Arabidopsis thaliana
AT5G53210 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21581606-21586605 Arabidopsis thaliana
AT5G53210 10.0kb upstream 10.0kb upstream 12336 true Chr5: 21586606-21598941 Arabidopsis thaliana
AT5G53210 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21588942-21598941 Arabidopsis thaliana
AT5G53210 10.0kb downstream 10.0kb downstream 12336 true Chr5: 21576606-21588941 Arabidopsis thaliana
AT5G53210 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21576606-21586605 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368479 5261 Brassicaceae View MSA
123840058 5264 Brassicales-Malvales View MSA
124343509 5266 SBM View MSA
124253997 5268 Malvidae View MSA
124060972 5270 Rosid View MSA
123746034 5271 Pentapetalae View MSA
122787503 5272 Eudicot View MSA
122042444 5273 Angiosperm View MSA
121350598 5274 Embryophyte View MSA
123428440 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.144        
cufflinks 0.006     Low Low
cufflinks 0.661        
cufflinks 0.007     Low Low
cufflinks 0.573        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain