Gene : FTSH11 A. thaliana TAIR10
Primary Identifier:  ? AT5G53170 Defline:  (1 of 1) PTHR23076:SF40 - ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 11, CHLOROPLASTIC/MITOCHONDRIAL
Genomic Order:  4758 Name:  ? AT5G53170
Secondary Identifier:  ? PAC:19669429
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G53170 0.5kb upstream 0.5kb upstream 5766 true Chr5: 21562747-21568512 Arabidopsis thaliana
AT5G53170 0.5kb upstream 0.5kb upstream 500 false Chr5: 21568013-21568512 Arabidopsis thaliana
AT5G53170 0.5kb downstream 0.5kb downstream 5766 true Chr5: 21562247-21568012 Arabidopsis thaliana
AT5G53170 0.5kb downstream 0.5kb downstream 500 false Chr5: 21562247-21562746 Arabidopsis thaliana
AT5G53170 1.0kb upstream 1.0kb upstream 6266 true Chr5: 21562747-21569012 Arabidopsis thaliana
AT5G53170 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21568013-21569012 Arabidopsis thaliana
AT5G53170 1.0kb downstream 1.0kb downstream 6266 true Chr5: 21561747-21568012 Arabidopsis thaliana
AT5G53170 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21561747-21562746 Arabidopsis thaliana
AT5G53170 2.0kb upstream 2.0kb upstream 7266 true Chr5: 21562747-21570012 Arabidopsis thaliana
AT5G53170 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21568013-21570012 Arabidopsis thaliana
AT5G53170 2.0kb downstream 2.0kb downstream 7266 true Chr5: 21560747-21568012 Arabidopsis thaliana
AT5G53170 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21560747-21562746 Arabidopsis thaliana
AT5G53170 5.0kb upstream 5.0kb upstream 10266 true Chr5: 21562747-21573012 Arabidopsis thaliana
AT5G53170 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21568013-21573012 Arabidopsis thaliana
AT5G53170 5.0kb downstream 5.0kb downstream 10266 true Chr5: 21557747-21568012 Arabidopsis thaliana
AT5G53170 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21557747-21562746 Arabidopsis thaliana
AT5G53170 10.0kb upstream 10.0kb upstream 15266 true Chr5: 21562747-21578012 Arabidopsis thaliana
AT5G53170 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21568013-21578012 Arabidopsis thaliana
AT5G53170 10.0kb downstream 10.0kb downstream 15266 true Chr5: 21552747-21568012 Arabidopsis thaliana
AT5G53170 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21552747-21562746 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376430 5261 Brassicaceae View MSA
123833688 5264 Brassicales-Malvales View MSA
124321889 5266 SBM View MSA
124253542 5268 Malvidae View MSA
124073797 5270 Rosid View MSA
123744222 5271 Pentapetalae View MSA
122793624 5272 Eudicot View MSA
122043793 5273 Angiosperm View MSA
121346284 5274 Embryophyte View MSA
123428638 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 31.692     High High
cufflinks 7.773        
cufflinks 21.592        
cufflinks 8.736        
cufflinks 17.323        
cufflinks 7.758        

0 Strain