Gene : AT5G53045 A. thaliana TAIR10
Defline:  (1 of 1) PF09341 - Transcription factor Pcc1 (Pcc1) Genomic Order:  4744
Name:  ? AT5G53045 Secondary Identifier:  ? PAC:19671573
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G53045 0.5kb upstream 0.5kb upstream 1725 true Chr5: 21508385-21510109 Arabidopsis thaliana
AT5G53045 0.5kb upstream 0.5kb upstream 500 false Chr5: 21509610-21510109 Arabidopsis thaliana
AT5G53045 0.5kb downstream 0.5kb downstream 1725 true Chr5: 21507885-21509609 Arabidopsis thaliana
AT5G53045 0.5kb downstream 0.5kb downstream 500 false Chr5: 21507885-21508384 Arabidopsis thaliana
AT5G53045 1.0kb upstream 1.0kb upstream 2225 true Chr5: 21508385-21510609 Arabidopsis thaliana
AT5G53045 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21509610-21510609 Arabidopsis thaliana
AT5G53045 1.0kb downstream 1.0kb downstream 2225 true Chr5: 21507385-21509609 Arabidopsis thaliana
AT5G53045 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21507385-21508384 Arabidopsis thaliana
AT5G53045 2.0kb upstream 2.0kb upstream 3225 true Chr5: 21508385-21511609 Arabidopsis thaliana
AT5G53045 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21509610-21511609 Arabidopsis thaliana
AT5G53045 2.0kb downstream 2.0kb downstream 3225 true Chr5: 21506385-21509609 Arabidopsis thaliana
AT5G53045 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21506385-21508384 Arabidopsis thaliana
AT5G53045 5.0kb upstream 5.0kb upstream 6225 true Chr5: 21508385-21514609 Arabidopsis thaliana
AT5G53045 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21509610-21514609 Arabidopsis thaliana
AT5G53045 5.0kb downstream 5.0kb downstream 6225 true Chr5: 21503385-21509609 Arabidopsis thaliana
AT5G53045 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21503385-21508384 Arabidopsis thaliana
AT5G53045 10.0kb upstream 10.0kb upstream 11225 true Chr5: 21508385-21519609 Arabidopsis thaliana
AT5G53045 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21509610-21519609 Arabidopsis thaliana
AT5G53045 10.0kb downstream 10.0kb downstream 11225 true Chr5: 21498385-21509609 Arabidopsis thaliana
AT5G53045 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21498385-21508384 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360985 5261 Brassicaceae View MSA
123833729 5264 Brassicales-Malvales View MSA
124346529 5266 SBM View MSA
124244344 5268 Malvidae View MSA
124050256 5270 Rosid View MSA
123736925 5271 Pentapetalae View MSA
122787092 5272 Eudicot View MSA
122043690 5273 Angiosperm View MSA
121347192 5274 Embryophyte View MSA
123380508 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.058        
cufflinks 6.455        
cufflinks 5.162        
cufflinks 5.555        
cufflinks 4.717       Low
cufflinks 7.162       High

0 Strain