Gene : AT5G52840 A. thaliana TAIR10
Defline:  (1 of 1) K03949 - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5 (NDUFA5) Genomic Order:  4719
Name:  ? AT5G52840 Secondary Identifier:  ? PAC:19670773
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-3781 Arabidopsis thaliana pathologic  
Athaliana PWY-4302 Arabidopsis thaliana pathologic  
Athaliana PWY-5083 Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G52840 0.5kb upstream 0.5kb upstream 1861 true Chr5: 21413146-21415006 Arabidopsis thaliana
AT5G52840 0.5kb upstream 0.5kb upstream 500 false Chr5: 21413146-21413645 Arabidopsis thaliana
AT5G52840 0.5kb downstream 0.5kb downstream 1861 true Chr5: 21413646-21415506 Arabidopsis thaliana
AT5G52840 0.5kb downstream 0.5kb downstream 500 false Chr5: 21415007-21415506 Arabidopsis thaliana
AT5G52840 1.0kb upstream 1.0kb upstream 2361 true Chr5: 21412646-21415006 Arabidopsis thaliana
AT5G52840 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21412646-21413645 Arabidopsis thaliana
AT5G52840 1.0kb downstream 1.0kb downstream 2361 true Chr5: 21413646-21416006 Arabidopsis thaliana
AT5G52840 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21415007-21416006 Arabidopsis thaliana
AT5G52840 2.0kb upstream 2.0kb upstream 3361 true Chr5: 21411646-21415006 Arabidopsis thaliana
AT5G52840 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21411646-21413645 Arabidopsis thaliana
AT5G52840 2.0kb downstream 2.0kb downstream 3361 true Chr5: 21413646-21417006 Arabidopsis thaliana
AT5G52840 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21415007-21417006 Arabidopsis thaliana
AT5G52840 5.0kb upstream 5.0kb upstream 6361 true Chr5: 21408646-21415006 Arabidopsis thaliana
AT5G52840 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21408646-21413645 Arabidopsis thaliana
AT5G52840 5.0kb downstream 5.0kb downstream 6361 true Chr5: 21413646-21420006 Arabidopsis thaliana
AT5G52840 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21415007-21420006 Arabidopsis thaliana
AT5G52840 10.0kb upstream 10.0kb upstream 11361 true Chr5: 21403646-21415006 Arabidopsis thaliana
AT5G52840 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21403646-21413645 Arabidopsis thaliana
AT5G52840 10.0kb downstream 10.0kb downstream 11361 true Chr5: 21413646-21425006 Arabidopsis thaliana
AT5G52840 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21415007-21425006 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378608 5261 Brassicaceae View MSA
123838702 5264 Brassicales-Malvales View MSA
124341816 5266 SBM View MSA
124240898 5268 Malvidae View MSA
124062156 5270 Rosid View MSA
123746684 5271 Pentapetalae View MSA
122793843 5272 Eudicot View MSA
122046813 5273 Angiosperm View MSA
121348614 5274 Embryophyte View MSA
123425136 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 66.313     High High
cufflinks 53.512     High Low
cufflinks 61.121     High  
cufflinks 54.883     High  
cufflinks 63.933     High  
cufflinks 55.495     High  

0 Strain