Gene : AT5G52890 A. thaliana TAIR10
Defline:  (1 of 2) PTHR34682//PTHR34682:SF2 - FAMILY NOT NAMED // DNA BINDING PROTEIN Genomic Order:  4725
Name:  ? AT5G52890 Secondary Identifier:  ? PAC:19669283
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G52890 0.5kb upstream 0.5kb upstream 2906 true Chr5: 21444835-21447740 Arabidopsis thaliana
AT5G52890 0.5kb upstream 0.5kb upstream 500 false Chr5: 21447241-21447740 Arabidopsis thaliana
AT5G52890 0.5kb downstream 0.5kb downstream 2906 true Chr5: 21444335-21447240 Arabidopsis thaliana
AT5G52890 0.5kb downstream 0.5kb downstream 500 false Chr5: 21444335-21444834 Arabidopsis thaliana
AT5G52890 1.0kb upstream 1.0kb upstream 3406 true Chr5: 21444835-21448240 Arabidopsis thaliana
AT5G52890 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21447241-21448240 Arabidopsis thaliana
AT5G52890 1.0kb downstream 1.0kb downstream 3406 true Chr5: 21443835-21447240 Arabidopsis thaliana
AT5G52890 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21443835-21444834 Arabidopsis thaliana
AT5G52890 2.0kb upstream 2.0kb upstream 4406 true Chr5: 21444835-21449240 Arabidopsis thaliana
AT5G52890 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21447241-21449240 Arabidopsis thaliana
AT5G52890 2.0kb downstream 2.0kb downstream 4406 true Chr5: 21442835-21447240 Arabidopsis thaliana
AT5G52890 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21442835-21444834 Arabidopsis thaliana
AT5G52890 5.0kb upstream 5.0kb upstream 7406 true Chr5: 21444835-21452240 Arabidopsis thaliana
AT5G52890 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21447241-21452240 Arabidopsis thaliana
AT5G52890 5.0kb downstream 5.0kb downstream 7406 true Chr5: 21439835-21447240 Arabidopsis thaliana
AT5G52890 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21439835-21444834 Arabidopsis thaliana
AT5G52890 10.0kb upstream 10.0kb upstream 12406 true Chr5: 21444835-21457240 Arabidopsis thaliana
AT5G52890 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21447241-21457240 Arabidopsis thaliana
AT5G52890 10.0kb downstream 10.0kb downstream 12406 true Chr5: 21434835-21447240 Arabidopsis thaliana
AT5G52890 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21434835-21444834 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361503 5261 Brassicaceae View MSA
123833681 5264 Brassicales-Malvales View MSA
124321888 5266 SBM View MSA
124245786 5268 Malvidae View MSA
124060982 5270 Rosid View MSA
123743810 5271 Pentapetalae View MSA
122794319 5272 Eudicot View MSA
122045641 5273 Angiosperm View MSA
121350221 5274 Embryophyte View MSA
123381629 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.969       High
cufflinks 0.269     Low Low
cufflinks 0.679        
cufflinks 0.282     Low  
cufflinks 0.959       High
cufflinks 0.32     Low  

0 Strain