Gene : AT5G52960 A. thaliana TAIR10
Defline:  (1 of 1) PF11341 - Protein of unknown function (DUF3143) (DUF3143) Genomic Order:  4733
Name:  ? AT5G52960 Secondary Identifier:  ? PAC:19671644
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G52960 0.5kb upstream 0.5kb upstream 1792 true Chr5: 21476646-21478437 Arabidopsis thaliana
AT5G52960 0.5kb upstream 0.5kb upstream 500 false Chr5: 21476646-21477145 Arabidopsis thaliana
AT5G52960 0.5kb downstream 0.5kb downstream 1792 true Chr5: 21477146-21478937 Arabidopsis thaliana
AT5G52960 0.5kb downstream 0.5kb downstream 500 false Chr5: 21478438-21478937 Arabidopsis thaliana
AT5G52960 1.0kb upstream 1.0kb upstream 2292 true Chr5: 21476146-21478437 Arabidopsis thaliana
AT5G52960 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21476146-21477145 Arabidopsis thaliana
AT5G52960 1.0kb downstream 1.0kb downstream 2292 true Chr5: 21477146-21479437 Arabidopsis thaliana
AT5G52960 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21478438-21479437 Arabidopsis thaliana
AT5G52960 2.0kb upstream 2.0kb upstream 3292 true Chr5: 21475146-21478437 Arabidopsis thaliana
AT5G52960 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21475146-21477145 Arabidopsis thaliana
AT5G52960 2.0kb downstream 2.0kb downstream 3292 true Chr5: 21477146-21480437 Arabidopsis thaliana
AT5G52960 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21478438-21480437 Arabidopsis thaliana
AT5G52960 5.0kb upstream 5.0kb upstream 6292 true Chr5: 21472146-21478437 Arabidopsis thaliana
AT5G52960 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21472146-21477145 Arabidopsis thaliana
AT5G52960 5.0kb downstream 5.0kb downstream 6292 true Chr5: 21477146-21483437 Arabidopsis thaliana
AT5G52960 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21478438-21483437 Arabidopsis thaliana
AT5G52960 10.0kb upstream 10.0kb upstream 11292 true Chr5: 21467146-21478437 Arabidopsis thaliana
AT5G52960 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21467146-21477145 Arabidopsis thaliana
AT5G52960 10.0kb downstream 10.0kb downstream 11292 true Chr5: 21477146-21488437 Arabidopsis thaliana
AT5G52960 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21478438-21488437 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361173 5261 Brassicaceae View MSA
123830705 5264 Brassicales-Malvales View MSA
124337862 5266 SBM View MSA
124239521 5268 Malvidae View MSA
124064012 5270 Rosid View MSA
123737181 5271 Pentapetalae View MSA
122792714 5272 Eudicot View MSA
122044446 5273 Angiosperm View MSA
121347894 5274 Embryophyte View MSA
123380669 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.367     High  
cufflinks 5.365        
cufflinks 40.324     High High
cufflinks 6.407        
cufflinks 29.81     High  
cufflinks 4.036       Low

0 Strain