Gene : AT5G52740 A. thaliana TAIR10
Defline:  (1 of 10) PTHR22814//PTHR22814:SF129 - COPPER TRANSPORT PROTEIN ATOX1-RELATED // COPPER TRANSPORT FAMILY PROTEIN-RELATED Genomic Order:  4709
Name:  ? AT5G52740 Secondary Identifier:  ? PAC:19665948
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G52740 0.5kb upstream 0.5kb upstream 1151 true Chr5: 21382030-21383180 Arabidopsis thaliana
AT5G52740 0.5kb upstream 0.5kb upstream 500 false Chr5: 21382030-21382529 Arabidopsis thaliana
AT5G52740 0.5kb downstream 0.5kb downstream 1151 true Chr5: 21382530-21383680 Arabidopsis thaliana
AT5G52740 0.5kb downstream 0.5kb downstream 500 false Chr5: 21383181-21383680 Arabidopsis thaliana
AT5G52740 1.0kb upstream 1.0kb upstream 1651 true Chr5: 21381530-21383180 Arabidopsis thaliana
AT5G52740 1.0kb upstream 1.0kb upstream 1000 false Chr5: 21381530-21382529 Arabidopsis thaliana
AT5G52740 1.0kb downstream 1.0kb downstream 1651 true Chr5: 21382530-21384180 Arabidopsis thaliana
AT5G52740 1.0kb downstream 1.0kb downstream 1000 false Chr5: 21383181-21384180 Arabidopsis thaliana
AT5G52740 2.0kb upstream 2.0kb upstream 2651 true Chr5: 21380530-21383180 Arabidopsis thaliana
AT5G52740 2.0kb upstream 2.0kb upstream 2000 false Chr5: 21380530-21382529 Arabidopsis thaliana
AT5G52740 2.0kb downstream 2.0kb downstream 2651 true Chr5: 21382530-21385180 Arabidopsis thaliana
AT5G52740 2.0kb downstream 2.0kb downstream 2000 false Chr5: 21383181-21385180 Arabidopsis thaliana
AT5G52740 5.0kb upstream 5.0kb upstream 5651 true Chr5: 21377530-21383180 Arabidopsis thaliana
AT5G52740 5.0kb upstream 5.0kb upstream 5000 false Chr5: 21377530-21382529 Arabidopsis thaliana
AT5G52740 5.0kb downstream 5.0kb downstream 5651 true Chr5: 21382530-21388180 Arabidopsis thaliana
AT5G52740 5.0kb downstream 5.0kb downstream 5000 false Chr5: 21383181-21388180 Arabidopsis thaliana
AT5G52740 10.0kb upstream 10.0kb upstream 10651 true Chr5: 21372530-21383180 Arabidopsis thaliana
AT5G52740 10.0kb upstream 10.0kb upstream 10000 false Chr5: 21372530-21382529 Arabidopsis thaliana
AT5G52740 10.0kb downstream 10.0kb downstream 10651 true Chr5: 21382530-21393180 Arabidopsis thaliana
AT5G52740 10.0kb downstream 10.0kb downstream 10000 false Chr5: 21383181-21393180 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381366 5261 Brassicaceae View MSA
123838445 5264 Brassicales-Malvales View MSA
124349979 5266 SBM View MSA
124250678 5268 Malvidae View MSA
124072200 5270 Rosid View MSA
123751300 5271 Pentapetalae View MSA
122793053 5272 Eudicot View MSA
122051560 5273 Angiosperm View MSA
121351529 5274 Embryophyte View MSA
123424750 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.343        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.746        
cufflinks 0.049     Low Low
cufflinks 2.247        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain