Gene : AT5G56260 A. thaliana TAIR10
Defline:  (1 of 1) PTHR33254:SF3 - REGULATOR OF RIBONUCLEASE-LIKE PROTEIN 3 Genomic Order:  5096
Name:  ? AT5G56260 Secondary Identifier:  ? PAC:19671441
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G56260 0.5kb upstream 0.5kb upstream 2480 true Chr5: 22775325-22777804 Arabidopsis thaliana
AT5G56260 0.5kb upstream 0.5kb upstream 500 false Chr5: 22777305-22777804 Arabidopsis thaliana
AT5G56260 0.5kb downstream 0.5kb downstream 2480 true Chr5: 22774825-22777304 Arabidopsis thaliana
AT5G56260 0.5kb downstream 0.5kb downstream 500 false Chr5: 22774825-22775324 Arabidopsis thaliana
AT5G56260 1.0kb upstream 1.0kb upstream 2980 true Chr5: 22775325-22778304 Arabidopsis thaliana
AT5G56260 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22777305-22778304 Arabidopsis thaliana
AT5G56260 1.0kb downstream 1.0kb downstream 2980 true Chr5: 22774325-22777304 Arabidopsis thaliana
AT5G56260 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22774325-22775324 Arabidopsis thaliana
AT5G56260 2.0kb upstream 2.0kb upstream 3980 true Chr5: 22775325-22779304 Arabidopsis thaliana
AT5G56260 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22777305-22779304 Arabidopsis thaliana
AT5G56260 2.0kb downstream 2.0kb downstream 3980 true Chr5: 22773325-22777304 Arabidopsis thaliana
AT5G56260 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22773325-22775324 Arabidopsis thaliana
AT5G56260 5.0kb upstream 5.0kb upstream 6980 true Chr5: 22775325-22782304 Arabidopsis thaliana
AT5G56260 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22777305-22782304 Arabidopsis thaliana
AT5G56260 5.0kb downstream 5.0kb downstream 6980 true Chr5: 22770325-22777304 Arabidopsis thaliana
AT5G56260 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22770325-22775324 Arabidopsis thaliana
AT5G56260 10.0kb upstream 10.0kb upstream 11980 true Chr5: 22775325-22787304 Arabidopsis thaliana
AT5G56260 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22777305-22787304 Arabidopsis thaliana
AT5G56260 10.0kb downstream 10.0kb downstream 11980 true Chr5: 22765325-22777304 Arabidopsis thaliana
AT5G56260 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22765325-22775324 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375585 5261 Brassicaceae View MSA
123834707 5264 Brassicales-Malvales View MSA
124345753 5266 SBM View MSA
124239316 5268 Malvidae View MSA
124068848 5270 Rosid View MSA
123748189 5271 Pentapetalae View MSA
122792101 5272 Eudicot View MSA
122047540 5273 Angiosperm View MSA
121351036 5274 Embryophyte View MSA
123426928 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.257     High High
cufflinks 9.752        
cufflinks 25.659        
cufflinks 10.554        
cufflinks 28.943     High  
cufflinks 8.669       Low

0 Strain