Gene : LLG1 A. thaliana TAIR10
Primary Identifier:  ? AT5G56170 Defline:  (1 of 4) PTHR31533:SF2 - GPI-ANCHORED PROTEIN LORELEI-RELATED
Genomic Order:  5087 Name:  ? AT5G56170
Secondary Identifier:  ? PAC:19665607
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G56170 0.5kb upstream 0.5kb upstream 1897 true Chr5: 22735415-22737311 Arabidopsis thaliana
AT5G56170 0.5kb upstream 0.5kb upstream 500 false Chr5: 22735415-22735914 Arabidopsis thaliana
AT5G56170 0.5kb downstream 0.5kb downstream 1897 true Chr5: 22735915-22737811 Arabidopsis thaliana
AT5G56170 0.5kb downstream 0.5kb downstream 500 false Chr5: 22737312-22737811 Arabidopsis thaliana
AT5G56170 1.0kb upstream 1.0kb upstream 2397 true Chr5: 22734915-22737311 Arabidopsis thaliana
AT5G56170 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22734915-22735914 Arabidopsis thaliana
AT5G56170 1.0kb downstream 1.0kb downstream 2397 true Chr5: 22735915-22738311 Arabidopsis thaliana
AT5G56170 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22737312-22738311 Arabidopsis thaliana
AT5G56170 2.0kb upstream 2.0kb upstream 3397 true Chr5: 22733915-22737311 Arabidopsis thaliana
AT5G56170 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22733915-22735914 Arabidopsis thaliana
AT5G56170 2.0kb downstream 2.0kb downstream 3397 true Chr5: 22735915-22739311 Arabidopsis thaliana
AT5G56170 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22737312-22739311 Arabidopsis thaliana
AT5G56170 5.0kb upstream 5.0kb upstream 6397 true Chr5: 22730915-22737311 Arabidopsis thaliana
AT5G56170 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22730915-22735914 Arabidopsis thaliana
AT5G56170 5.0kb downstream 5.0kb downstream 6397 true Chr5: 22735915-22742311 Arabidopsis thaliana
AT5G56170 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22737312-22742311 Arabidopsis thaliana
AT5G56170 10.0kb upstream 10.0kb upstream 11397 true Chr5: 22725915-22737311 Arabidopsis thaliana
AT5G56170 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22725915-22735914 Arabidopsis thaliana
AT5G56170 10.0kb downstream 10.0kb downstream 11397 true Chr5: 22735915-22747311 Arabidopsis thaliana
AT5G56170 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22737312-22747311 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367315 5261 Brassicaceae View MSA
123828437 5264 Brassicales-Malvales View MSA
124345106 5266 SBM View MSA
124251185 5268 Malvidae View MSA
124072750 5270 Rosid View MSA
123750989 5271 Pentapetalae View MSA
122787745 5272 Eudicot View MSA
122045868 5273 Angiosperm View MSA
121350043 5274 Embryophyte View MSA
123381553 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 54.433     High  
cufflinks 97.99     High High
cufflinks 45.509     High  
cufflinks 73.316     High  
cufflinks 37.714     High Low
cufflinks 103.104     High High

0 Strain