Gene : PRA1.G2 A. thaliana TAIR10
Primary Identifier:  ? AT5G56230 Defline:  (1 of 2) PTHR19317:SF11 - PRA1 FAMILY PROTEIN G1-RELATED
Genomic Order:  5093 Name:  ? AT5G56230
Secondary Identifier:  ? PAC:19670151
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G56230 0.5kb upstream 0.5kb upstream 1104 true Chr5: 22758768-22759871 Arabidopsis thaliana
AT5G56230 0.5kb upstream 0.5kb upstream 500 false Chr5: 22759372-22759871 Arabidopsis thaliana
AT5G56230 0.5kb downstream 0.5kb downstream 1104 true Chr5: 22758268-22759371 Arabidopsis thaliana
AT5G56230 0.5kb downstream 0.5kb downstream 500 false Chr5: 22758268-22758767 Arabidopsis thaliana
AT5G56230 1.0kb upstream 1.0kb upstream 1604 true Chr5: 22758768-22760371 Arabidopsis thaliana
AT5G56230 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22759372-22760371 Arabidopsis thaliana
AT5G56230 1.0kb downstream 1.0kb downstream 1604 true Chr5: 22757768-22759371 Arabidopsis thaliana
AT5G56230 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22757768-22758767 Arabidopsis thaliana
AT5G56230 2.0kb upstream 2.0kb upstream 2604 true Chr5: 22758768-22761371 Arabidopsis thaliana
AT5G56230 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22759372-22761371 Arabidopsis thaliana
AT5G56230 2.0kb downstream 2.0kb downstream 2604 true Chr5: 22756768-22759371 Arabidopsis thaliana
AT5G56230 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22756768-22758767 Arabidopsis thaliana
AT5G56230 5.0kb upstream 5.0kb upstream 5604 true Chr5: 22758768-22764371 Arabidopsis thaliana
AT5G56230 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22759372-22764371 Arabidopsis thaliana
AT5G56230 5.0kb downstream 5.0kb downstream 5604 true Chr5: 22753768-22759371 Arabidopsis thaliana
AT5G56230 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22753768-22758767 Arabidopsis thaliana
AT5G56230 10.0kb upstream 10.0kb upstream 10604 true Chr5: 22758768-22769371 Arabidopsis thaliana
AT5G56230 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22759372-22769371 Arabidopsis thaliana
AT5G56230 10.0kb downstream 10.0kb downstream 10604 true Chr5: 22748768-22759371 Arabidopsis thaliana
AT5G56230 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22748768-22758767 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362134 5261 Brassicaceae View MSA
123834128 5264 Brassicales-Malvales View MSA
124321927 5266 SBM View MSA
124243109 5268 Malvidae View MSA
124050222 5270 Rosid View MSA
123746302 5271 Pentapetalae View MSA
122771852 5272 Eudicot View MSA
122042162 5273 Angiosperm View MSA
121309928 5274 Embryophyte View MSA
123347558 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.263       High
cufflinks 2.035        
cufflinks 1.635        
cufflinks 2.479        
cufflinks 2.269        
cufflinks 1.895        

0 Strain