Gene : AT5G56200 A. thaliana TAIR10
Defline:  (1 of 43) PF13912 - C2H2-type zinc finger (zf-C2H2_6) Genomic Order:  5090
Name:  ? AT5G56200 Secondary Identifier:  ? PAC:19666400
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G56200 0.5kb upstream 0.5kb upstream 1982 true Chr5: 22747268-22749249 Arabidopsis thaliana
AT5G56200 0.5kb upstream 0.5kb upstream 500 false Chr5: 22747268-22747767 Arabidopsis thaliana
AT5G56200 0.5kb downstream 0.5kb downstream 1982 true Chr5: 22747768-22749749 Arabidopsis thaliana
AT5G56200 0.5kb downstream 0.5kb downstream 500 false Chr5: 22749250-22749749 Arabidopsis thaliana
AT5G56200 1.0kb upstream 1.0kb upstream 2482 true Chr5: 22746768-22749249 Arabidopsis thaliana
AT5G56200 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22746768-22747767 Arabidopsis thaliana
AT5G56200 1.0kb downstream 1.0kb downstream 2482 true Chr5: 22747768-22750249 Arabidopsis thaliana
AT5G56200 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22749250-22750249 Arabidopsis thaliana
AT5G56200 2.0kb upstream 2.0kb upstream 3482 true Chr5: 22745768-22749249 Arabidopsis thaliana
AT5G56200 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22745768-22747767 Arabidopsis thaliana
AT5G56200 2.0kb downstream 2.0kb downstream 3482 true Chr5: 22747768-22751249 Arabidopsis thaliana
AT5G56200 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22749250-22751249 Arabidopsis thaliana
AT5G56200 5.0kb upstream 5.0kb upstream 6482 true Chr5: 22742768-22749249 Arabidopsis thaliana
AT5G56200 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22742768-22747767 Arabidopsis thaliana
AT5G56200 5.0kb downstream 5.0kb downstream 6482 true Chr5: 22747768-22754249 Arabidopsis thaliana
AT5G56200 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22749250-22754249 Arabidopsis thaliana
AT5G56200 10.0kb upstream 10.0kb upstream 11482 true Chr5: 22737768-22749249 Arabidopsis thaliana
AT5G56200 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22737768-22747767 Arabidopsis thaliana
AT5G56200 10.0kb downstream 10.0kb downstream 11482 true Chr5: 22747768-22759249 Arabidopsis thaliana
AT5G56200 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22749250-22759249 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122360980 5261 Brassicaceae View MSA
123839422 5264 Brassicales-Malvales View MSA
124342047 5266 SBM View MSA
124248505 5268 Malvidae View MSA
124070419 5270 Rosid View MSA
123743866 5271 Pentapetalae View MSA
122796757 5272 Eudicot View MSA
122051585 5273 Angiosperm View MSA
121348252 5274 Embryophyte View MSA
123380791 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.126     Low  
cufflinks 0.123     Low  
cufflinks 0.143     Low  
cufflinks 0.204     Low High
cufflinks 0.142     Low  
cufflinks 0.139     Low  

0 Strain