Gene : OLI2 A. thaliana TAIR10
Primary Identifier:  ? AT5G55920 Defline:  (1 of 2) 2.1.1.178 - 16S rRNA (cytosine(1407)-C(5))-methyltransferase
Genomic Order:  5061 Name:  ? AT5G55920
Secondary Identifier:  ? PAC:19668817
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G55920 0.5kb upstream 0.5kb upstream 4465 true Chr5: 22645483-22649947 Arabidopsis thaliana
AT5G55920 0.5kb upstream 0.5kb upstream 500 false Chr5: 22649448-22649947 Arabidopsis thaliana
AT5G55920 0.5kb downstream 0.5kb downstream 4465 true Chr5: 22644983-22649447 Arabidopsis thaliana
AT5G55920 0.5kb downstream 0.5kb downstream 500 false Chr5: 22644983-22645482 Arabidopsis thaliana
AT5G55920 1.0kb upstream 1.0kb upstream 4965 true Chr5: 22645483-22650447 Arabidopsis thaliana
AT5G55920 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22649448-22650447 Arabidopsis thaliana
AT5G55920 1.0kb downstream 1.0kb downstream 4965 true Chr5: 22644483-22649447 Arabidopsis thaliana
AT5G55920 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22644483-22645482 Arabidopsis thaliana
AT5G55920 2.0kb upstream 2.0kb upstream 5965 true Chr5: 22645483-22651447 Arabidopsis thaliana
AT5G55920 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22649448-22651447 Arabidopsis thaliana
AT5G55920 2.0kb downstream 2.0kb downstream 5965 true Chr5: 22643483-22649447 Arabidopsis thaliana
AT5G55920 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22643483-22645482 Arabidopsis thaliana
AT5G55920 5.0kb upstream 5.0kb upstream 8965 true Chr5: 22645483-22654447 Arabidopsis thaliana
AT5G55920 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22649448-22654447 Arabidopsis thaliana
AT5G55920 5.0kb downstream 5.0kb downstream 8965 true Chr5: 22640483-22649447 Arabidopsis thaliana
AT5G55920 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22640483-22645482 Arabidopsis thaliana
AT5G55920 10.0kb upstream 10.0kb upstream 13965 true Chr5: 22645483-22659447 Arabidopsis thaliana
AT5G55920 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22649448-22659447 Arabidopsis thaliana
AT5G55920 10.0kb downstream 10.0kb downstream 13965 true Chr5: 22635483-22649447 Arabidopsis thaliana
AT5G55920 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22635483-22645482 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370457 5261 Brassicaceae View MSA
123799968 5264 Brassicales-Malvales View MSA
124297435 5266 SBM View MSA
124250297 5268 Malvidae View MSA
124073549 5270 Rosid View MSA
123740047 5271 Pentapetalae View MSA
122787436 5272 Eudicot View MSA
122043907 5273 Angiosperm View MSA
121346553 5274 Embryophyte View MSA
123427921 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.408        
cufflinks 12.366        
cufflinks 7.7        
cufflinks 13.173        
cufflinks 6.073       Low
cufflinks 17.008       High

0 Strain