Gene : emb2731 A. thaliana TAIR10
Primary Identifier:  ? AT5G55940 Defline:  (1 of 1) KOG3289 - Uncharacterized conserved protein encoded by sequence overlapping the COX4 gene
Genomic Order:  5063 Name:  ? AT5G55940
Secondary Identifier:  ? PAC:19670027
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0 Pathways

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G55940 0.5kb upstream 0.5kb upstream 2551 true Chr5: 22655998-22658548 Arabidopsis thaliana
AT5G55940 0.5kb upstream 0.5kb upstream 500 false Chr5: 22658049-22658548 Arabidopsis thaliana
AT5G55940 0.5kb downstream 0.5kb downstream 2551 true Chr5: 22655498-22658048 Arabidopsis thaliana
AT5G55940 0.5kb downstream 0.5kb downstream 500 false Chr5: 22655498-22655997 Arabidopsis thaliana
AT5G55940 1.0kb upstream 1.0kb upstream 3051 true Chr5: 22655998-22659048 Arabidopsis thaliana
AT5G55940 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22658049-22659048 Arabidopsis thaliana
AT5G55940 1.0kb downstream 1.0kb downstream 3051 true Chr5: 22654998-22658048 Arabidopsis thaliana
AT5G55940 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22654998-22655997 Arabidopsis thaliana
AT5G55940 2.0kb upstream 2.0kb upstream 4051 true Chr5: 22655998-22660048 Arabidopsis thaliana
AT5G55940 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22658049-22660048 Arabidopsis thaliana
AT5G55940 2.0kb downstream 2.0kb downstream 4051 true Chr5: 22653998-22658048 Arabidopsis thaliana
AT5G55940 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22653998-22655997 Arabidopsis thaliana
AT5G55940 5.0kb upstream 5.0kb upstream 7051 true Chr5: 22655998-22663048 Arabidopsis thaliana
AT5G55940 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22658049-22663048 Arabidopsis thaliana
AT5G55940 5.0kb downstream 5.0kb downstream 7051 true Chr5: 22650998-22658048 Arabidopsis thaliana
AT5G55940 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22650998-22655997 Arabidopsis thaliana
AT5G55940 10.0kb upstream 10.0kb upstream 12051 true Chr5: 22655998-22668048 Arabidopsis thaliana
AT5G55940 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22658049-22668048 Arabidopsis thaliana
AT5G55940 10.0kb downstream 10.0kb downstream 12051 true Chr5: 22645998-22658048 Arabidopsis thaliana
AT5G55940 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22645998-22655997 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122378449 5261 Brassicaceae View MSA
123839581 5264 Brassicales-Malvales View MSA
124346818 5266 SBM View MSA
124245646 5268 Malvidae View MSA
124069213 5270 Rosid View MSA
123743483 5271 Pentapetalae View MSA
122794438 5272 Eudicot View MSA
122048764 5273 Angiosperm View MSA
121351513 5274 Embryophyte View MSA
123425734 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.536        
cufflinks 34.974     High  
cufflinks 17.263       Low
cufflinks 35.031     High  
cufflinks 17.472       Low
cufflinks 37.225     High High

0 Strain