Gene : AT5G55580 A. thaliana TAIR10
Defline:  (1 of 1) PTHR13068:SF13 - MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN Genomic Order:  5024
Name:  ? AT5G55580 Secondary Identifier:  ? PAC:19667743
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G55580 0.5kb upstream 0.5kb upstream 2990 true Chr5: 22514940-22517929 Arabidopsis thaliana
AT5G55580 0.5kb upstream 0.5kb upstream 500 false Chr5: 22514940-22515439 Arabidopsis thaliana
AT5G55580 0.5kb downstream 0.5kb downstream 2990 true Chr5: 22515440-22518429 Arabidopsis thaliana
AT5G55580 0.5kb downstream 0.5kb downstream 500 false Chr5: 22517930-22518429 Arabidopsis thaliana
AT5G55580 1.0kb upstream 1.0kb upstream 3490 true Chr5: 22514440-22517929 Arabidopsis thaliana
AT5G55580 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22514440-22515439 Arabidopsis thaliana
AT5G55580 1.0kb downstream 1.0kb downstream 3490 true Chr5: 22515440-22518929 Arabidopsis thaliana
AT5G55580 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22517930-22518929 Arabidopsis thaliana
AT5G55580 2.0kb upstream 2.0kb upstream 4490 true Chr5: 22513440-22517929 Arabidopsis thaliana
AT5G55580 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22513440-22515439 Arabidopsis thaliana
AT5G55580 2.0kb downstream 2.0kb downstream 4490 true Chr5: 22515440-22519929 Arabidopsis thaliana
AT5G55580 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22517930-22519929 Arabidopsis thaliana
AT5G55580 5.0kb upstream 5.0kb upstream 7490 true Chr5: 22510440-22517929 Arabidopsis thaliana
AT5G55580 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22510440-22515439 Arabidopsis thaliana
AT5G55580 5.0kb downstream 5.0kb downstream 7490 true Chr5: 22515440-22522929 Arabidopsis thaliana
AT5G55580 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22517930-22522929 Arabidopsis thaliana
AT5G55580 10.0kb upstream 10.0kb upstream 12490 true Chr5: 22505440-22517929 Arabidopsis thaliana
AT5G55580 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22505440-22515439 Arabidopsis thaliana
AT5G55580 10.0kb downstream 10.0kb downstream 12490 true Chr5: 22515440-22527929 Arabidopsis thaliana
AT5G55580 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22517930-22527929 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369751 5261 Brassicaceae View MSA
123830331 5264 Brassicales-Malvales View MSA
124342060 5266 SBM View MSA
124242661 5268 Malvidae View MSA
124067725 5270 Rosid View MSA
123736541 5271 Pentapetalae View MSA
122786414 5272 Eudicot View MSA
122044660 5273 Angiosperm View MSA
121345820 5274 Embryophyte View MSA
123427998 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.113        
cufflinks 5.15        
cufflinks 10.562       High
cufflinks 4.964        
cufflinks 7.179        
cufflinks 4.548       Low

0 Strain