Gene : AT5G55220 A. thaliana TAIR10
Defline:  (1 of 1) PTHR30560//PTHR30560:SF3 - TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE // TRIGGER FACTOR-LIKE PROTEIN TIG Genomic Order:  4986
Name:  ? AT5G55220 Secondary Identifier:  ? PAC:19669108
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G55220 0.5kb upstream 0.5kb upstream 3727 true Chr5: 22397116-22400842 Arabidopsis thaliana
AT5G55220 0.5kb upstream 0.5kb upstream 500 false Chr5: 22397116-22397615 Arabidopsis thaliana
AT5G55220 0.5kb downstream 0.5kb downstream 3727 true Chr5: 22397616-22401342 Arabidopsis thaliana
AT5G55220 0.5kb downstream 0.5kb downstream 500 false Chr5: 22400843-22401342 Arabidopsis thaliana
AT5G55220 1.0kb upstream 1.0kb upstream 4227 true Chr5: 22396616-22400842 Arabidopsis thaliana
AT5G55220 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22396616-22397615 Arabidopsis thaliana
AT5G55220 1.0kb downstream 1.0kb downstream 4227 true Chr5: 22397616-22401842 Arabidopsis thaliana
AT5G55220 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22400843-22401842 Arabidopsis thaliana
AT5G55220 2.0kb upstream 2.0kb upstream 5227 true Chr5: 22395616-22400842 Arabidopsis thaliana
AT5G55220 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22395616-22397615 Arabidopsis thaliana
AT5G55220 2.0kb downstream 2.0kb downstream 5227 true Chr5: 22397616-22402842 Arabidopsis thaliana
AT5G55220 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22400843-22402842 Arabidopsis thaliana
AT5G55220 5.0kb upstream 5.0kb upstream 8227 true Chr5: 22392616-22400842 Arabidopsis thaliana
AT5G55220 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22392616-22397615 Arabidopsis thaliana
AT5G55220 5.0kb downstream 5.0kb downstream 8227 true Chr5: 22397616-22405842 Arabidopsis thaliana
AT5G55220 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22400843-22405842 Arabidopsis thaliana
AT5G55220 10.0kb upstream 10.0kb upstream 13227 true Chr5: 22387616-22400842 Arabidopsis thaliana
AT5G55220 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22387616-22397615 Arabidopsis thaliana
AT5G55220 10.0kb downstream 10.0kb downstream 13227 true Chr5: 22397616-22410842 Arabidopsis thaliana
AT5G55220 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22400843-22410842 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369496 5261 Brassicaceae View MSA
123828829 5264 Brassicales-Malvales View MSA
124339422 5266 SBM View MSA
124240137 5268 Malvidae View MSA
124061655 5270 Rosid View MSA
123738103 5271 Pentapetalae View MSA
122786628 5272 Eudicot View MSA
122042238 5273 Angiosperm View MSA
121345514 5274 Embryophyte View MSA
123423774 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 52.952     High  
cufflinks 2.604        
cufflinks 61.69     High High
cufflinks 2.601        
cufflinks 39.211     High  
cufflinks 2.727        

0 Strain