Gene : AT5G55100 A. thaliana TAIR10
Defline:  (1 of 1) PTHR13161//PTHR13161:SF15 - SPLICING FACTOR SUPPRESSOR OF WHITE APRICOT // SPLICING FACTOR, SUPPRESSOR OF WHITE-APRICOT HOMOLOG Genomic Order:  4970
Name:  ? AT5G55100 Secondary Identifier:  ? PAC:19668459
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G55100 0.5kb upstream 0.5kb upstream 4179 true Chr5: 22361102-22365280 Arabidopsis thaliana
AT5G55100 0.5kb upstream 0.5kb upstream 500 false Chr5: 22364781-22365280 Arabidopsis thaliana
AT5G55100 0.5kb downstream 0.5kb downstream 4179 true Chr5: 22360602-22364780 Arabidopsis thaliana
AT5G55100 0.5kb downstream 0.5kb downstream 500 false Chr5: 22360602-22361101 Arabidopsis thaliana
AT5G55100 1.0kb upstream 1.0kb upstream 4679 true Chr5: 22361102-22365780 Arabidopsis thaliana
AT5G55100 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22364781-22365780 Arabidopsis thaliana
AT5G55100 1.0kb downstream 1.0kb downstream 4679 true Chr5: 22360102-22364780 Arabidopsis thaliana
AT5G55100 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22360102-22361101 Arabidopsis thaliana
AT5G55100 2.0kb upstream 2.0kb upstream 5679 true Chr5: 22361102-22366780 Arabidopsis thaliana
AT5G55100 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22364781-22366780 Arabidopsis thaliana
AT5G55100 2.0kb downstream 2.0kb downstream 5679 true Chr5: 22359102-22364780 Arabidopsis thaliana
AT5G55100 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22359102-22361101 Arabidopsis thaliana
AT5G55100 5.0kb upstream 5.0kb upstream 8679 true Chr5: 22361102-22369780 Arabidopsis thaliana
AT5G55100 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22364781-22369780 Arabidopsis thaliana
AT5G55100 5.0kb downstream 5.0kb downstream 8679 true Chr5: 22356102-22364780 Arabidopsis thaliana
AT5G55100 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22356102-22361101 Arabidopsis thaliana
AT5G55100 10.0kb upstream 10.0kb upstream 13679 true Chr5: 22361102-22374780 Arabidopsis thaliana
AT5G55100 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22364781-22374780 Arabidopsis thaliana
AT5G55100 10.0kb downstream 10.0kb downstream 13679 true Chr5: 22351102-22364780 Arabidopsis thaliana
AT5G55100 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22351102-22361101 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366999 5261 Brassicaceae View MSA
123838804 5264 Brassicales-Malvales View MSA
124336562 5266 SBM View MSA
124238921 5268 Malvidae View MSA
124061656 5270 Rosid View MSA
123739553 5271 Pentapetalae View MSA
122786719 5272 Eudicot View MSA
122047269 5273 Angiosperm View MSA
121346559 5274 Embryophyte View MSA
123424366 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.92       High
cufflinks 9.673        
cufflinks 7.945       Low
cufflinks 11.126       High
cufflinks 8.838        
cufflinks 8.484        

0 Strain