Gene : VTC5 A. thaliana TAIR10
Primary Identifier:  ? AT5G55120 Defline:  (1 of 2) 2.7.7.69 - GDP-L-galactose phosphorylase
Genomic Order:  4972 Name:  ? AT5G55120
Secondary Identifier:  ? PAC:19665483
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-882 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G55120 0.5kb upstream 0.5kb upstream 3273 true Chr5: 22368595-22371867 Arabidopsis thaliana
AT5G55120 0.5kb upstream 0.5kb upstream 500 false Chr5: 22368595-22369094 Arabidopsis thaliana
AT5G55120 0.5kb downstream 0.5kb downstream 3273 true Chr5: 22369095-22372367 Arabidopsis thaliana
AT5G55120 0.5kb downstream 0.5kb downstream 500 false Chr5: 22371868-22372367 Arabidopsis thaliana
AT5G55120 1.0kb upstream 1.0kb upstream 3773 true Chr5: 22368095-22371867 Arabidopsis thaliana
AT5G55120 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22368095-22369094 Arabidopsis thaliana
AT5G55120 1.0kb downstream 1.0kb downstream 3773 true Chr5: 22369095-22372867 Arabidopsis thaliana
AT5G55120 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22371868-22372867 Arabidopsis thaliana
AT5G55120 2.0kb upstream 2.0kb upstream 4773 true Chr5: 22367095-22371867 Arabidopsis thaliana
AT5G55120 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22367095-22369094 Arabidopsis thaliana
AT5G55120 2.0kb downstream 2.0kb downstream 4773 true Chr5: 22369095-22373867 Arabidopsis thaliana
AT5G55120 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22371868-22373867 Arabidopsis thaliana
AT5G55120 5.0kb upstream 5.0kb upstream 7773 true Chr5: 22364095-22371867 Arabidopsis thaliana
AT5G55120 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22364095-22369094 Arabidopsis thaliana
AT5G55120 5.0kb downstream 5.0kb downstream 7773 true Chr5: 22369095-22376867 Arabidopsis thaliana
AT5G55120 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22371868-22376867 Arabidopsis thaliana
AT5G55120 10.0kb upstream 10.0kb upstream 12773 true Chr5: 22359095-22371867 Arabidopsis thaliana
AT5G55120 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22359095-22369094 Arabidopsis thaliana
AT5G55120 10.0kb downstream 10.0kb downstream 12773 true Chr5: 22369095-22381867 Arabidopsis thaliana
AT5G55120 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22371868-22381867 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377404 5261 Brassicaceae View MSA
123835085 5264 Brassicales-Malvales View MSA
124347408 5266 SBM View MSA
124245480 5268 Malvidae View MSA
124071871 5270 Rosid View MSA
123751256 5271 Pentapetalae View MSA
122793442 5272 Eudicot View MSA
122044489 5273 Angiosperm View MSA
121349330 5274 Embryophyte View MSA
123424251 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.947       Low
cufflinks 43.164     High  
cufflinks 32.599     High  
cufflinks 41.549     High  
cufflinks 24.275        
cufflinks 33.535     High  

0 Strain