Gene : AT5G54780 A. thaliana TAIR10
Defline:  (1 of 2) PTHR22957//PTHR22957:SF276 - TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  4937
Name:  ? AT5G54780 Secondary Identifier:  ? PAC:19667896
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G54780 0.5kb upstream 0.5kb upstream 3917 true Chr5: 22248447-22252363 Arabidopsis thaliana
AT5G54780 0.5kb upstream 0.5kb upstream 500 false Chr5: 22251864-22252363 Arabidopsis thaliana
AT5G54780 0.5kb downstream 0.5kb downstream 3917 true Chr5: 22247947-22251863 Arabidopsis thaliana
AT5G54780 0.5kb downstream 0.5kb downstream 500 false Chr5: 22247947-22248446 Arabidopsis thaliana
AT5G54780 1.0kb upstream 1.0kb upstream 4417 true Chr5: 22248447-22252863 Arabidopsis thaliana
AT5G54780 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22251864-22252863 Arabidopsis thaliana
AT5G54780 1.0kb downstream 1.0kb downstream 4417 true Chr5: 22247447-22251863 Arabidopsis thaliana
AT5G54780 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22247447-22248446 Arabidopsis thaliana
AT5G54780 2.0kb upstream 2.0kb upstream 5417 true Chr5: 22248447-22253863 Arabidopsis thaliana
AT5G54780 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22251864-22253863 Arabidopsis thaliana
AT5G54780 2.0kb downstream 2.0kb downstream 5417 true Chr5: 22246447-22251863 Arabidopsis thaliana
AT5G54780 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22246447-22248446 Arabidopsis thaliana
AT5G54780 5.0kb upstream 5.0kb upstream 8417 true Chr5: 22248447-22256863 Arabidopsis thaliana
AT5G54780 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22251864-22256863 Arabidopsis thaliana
AT5G54780 5.0kb downstream 5.0kb downstream 8417 true Chr5: 22243447-22251863 Arabidopsis thaliana
AT5G54780 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22243447-22248446 Arabidopsis thaliana
AT5G54780 10.0kb upstream 10.0kb upstream 13417 true Chr5: 22248447-22261863 Arabidopsis thaliana
AT5G54780 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22251864-22261863 Arabidopsis thaliana
AT5G54780 10.0kb downstream 10.0kb downstream 13417 true Chr5: 22238447-22251863 Arabidopsis thaliana
AT5G54780 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22238447-22248446 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122375547 5261 Brassicaceae View MSA
123838028 5264 Brassicales-Malvales View MSA
124342242 5266 SBM View MSA
124253987 5268 Malvidae View MSA
124064798 5270 Rosid View MSA
123749746 5271 Pentapetalae View MSA
122789971 5272 Eudicot View MSA
122046428 5273 Angiosperm View MSA
121350403 5274 Embryophyte View MSA
123428253 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.635        
cufflinks 4.217        
cufflinks 2.461       Low
cufflinks 4.369       High
cufflinks 2.751        
cufflinks 3.426        

0 Strain