Gene : SGP1 A. thaliana TAIR10
Primary Identifier:  ? AT5G54840 Defline:  (1 of 2) PTHR24073//PTHR24073:SF515 - FAMILY NOT NAMED // GENOMIC DNA, CHROMOSOME 3, P1 CLONE: MSD21
Genomic Order:  4943 Name:  ? AT5G54840
Secondary Identifier:  ? PAC:19672920
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G54840 0.5kb upstream 0.5kb upstream 2411 true Chr5: 22276513-22278923 Arabidopsis thaliana
AT5G54840 0.5kb upstream 0.5kb upstream 500 false Chr5: 22278424-22278923 Arabidopsis thaliana
AT5G54840 0.5kb downstream 0.5kb downstream 2411 true Chr5: 22276013-22278423 Arabidopsis thaliana
AT5G54840 0.5kb downstream 0.5kb downstream 500 false Chr5: 22276013-22276512 Arabidopsis thaliana
AT5G54840 1.0kb upstream 1.0kb upstream 2911 true Chr5: 22276513-22279423 Arabidopsis thaliana
AT5G54840 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22278424-22279423 Arabidopsis thaliana
AT5G54840 1.0kb downstream 1.0kb downstream 2911 true Chr5: 22275513-22278423 Arabidopsis thaliana
AT5G54840 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22275513-22276512 Arabidopsis thaliana
AT5G54840 2.0kb upstream 2.0kb upstream 3911 true Chr5: 22276513-22280423 Arabidopsis thaliana
AT5G54840 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22278424-22280423 Arabidopsis thaliana
AT5G54840 2.0kb downstream 2.0kb downstream 3911 true Chr5: 22274513-22278423 Arabidopsis thaliana
AT5G54840 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22274513-22276512 Arabidopsis thaliana
AT5G54840 5.0kb upstream 5.0kb upstream 6911 true Chr5: 22276513-22283423 Arabidopsis thaliana
AT5G54840 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22278424-22283423 Arabidopsis thaliana
AT5G54840 5.0kb downstream 5.0kb downstream 6911 true Chr5: 22271513-22278423 Arabidopsis thaliana
AT5G54840 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22271513-22276512 Arabidopsis thaliana
AT5G54840 10.0kb upstream 10.0kb upstream 11911 true Chr5: 22276513-22288423 Arabidopsis thaliana
AT5G54840 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22278424-22288423 Arabidopsis thaliana
AT5G54840 10.0kb downstream 10.0kb downstream 11911 true Chr5: 22266513-22278423 Arabidopsis thaliana
AT5G54840 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22266513-22276512 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029161 5273 Angiosperm View MSA
122364704 5261 Brassicaceae View MSA
123834787 5264 Brassicales-Malvales View MSA
124345636 5266 SBM View MSA
124238869 5268 Malvidae View MSA
124064316 5270 Rosid View MSA
123753329 5271 Pentapetalae View MSA
122789157 5272 Eudicot View MSA
121298542 5274 Embryophyte View MSA
123336508 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.039        
cufflinks 7.367        
cufflinks 2.244       Low
cufflinks 11.272       High
cufflinks 3.891        
cufflinks 5.917        

0 Strain