Gene : AT5G54750 A. thaliana TAIR10
Defline:  (1 of 1) PTHR13048 - TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3 Genomic Order:  4934
Name:  ? AT5G54750 Secondary Identifier:  ? PAC:19666240
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G54750 0.5kb upstream 0.5kb upstream 2741 true Chr5: 22240981-22243721 Arabidopsis thaliana
AT5G54750 0.5kb upstream 0.5kb upstream 500 false Chr5: 22240981-22241480 Arabidopsis thaliana
AT5G54750 0.5kb downstream 0.5kb downstream 2741 true Chr5: 22241481-22244221 Arabidopsis thaliana
AT5G54750 0.5kb downstream 0.5kb downstream 500 false Chr5: 22243722-22244221 Arabidopsis thaliana
AT5G54750 1.0kb upstream 1.0kb upstream 3241 true Chr5: 22240481-22243721 Arabidopsis thaliana
AT5G54750 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22240481-22241480 Arabidopsis thaliana
AT5G54750 1.0kb downstream 1.0kb downstream 3241 true Chr5: 22241481-22244721 Arabidopsis thaliana
AT5G54750 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22243722-22244721 Arabidopsis thaliana
AT5G54750 2.0kb upstream 2.0kb upstream 4241 true Chr5: 22239481-22243721 Arabidopsis thaliana
AT5G54750 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22239481-22241480 Arabidopsis thaliana
AT5G54750 2.0kb downstream 2.0kb downstream 4241 true Chr5: 22241481-22245721 Arabidopsis thaliana
AT5G54750 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22243722-22245721 Arabidopsis thaliana
AT5G54750 5.0kb upstream 5.0kb upstream 7241 true Chr5: 22236481-22243721 Arabidopsis thaliana
AT5G54750 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22236481-22241480 Arabidopsis thaliana
AT5G54750 5.0kb downstream 5.0kb downstream 7241 true Chr5: 22241481-22248721 Arabidopsis thaliana
AT5G54750 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22243722-22248721 Arabidopsis thaliana
AT5G54750 10.0kb upstream 10.0kb upstream 12241 true Chr5: 22231481-22243721 Arabidopsis thaliana
AT5G54750 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22231481-22241480 Arabidopsis thaliana
AT5G54750 10.0kb downstream 10.0kb downstream 12241 true Chr5: 22241481-22253721 Arabidopsis thaliana
AT5G54750 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22243722-22253721 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364966 5261 Brassicaceae View MSA
123834812 5264 Brassicales-Malvales View MSA
124340970 5266 SBM View MSA
124238754 5268 Malvidae View MSA
124061574 5270 Rosid View MSA
123738457 5271 Pentapetalae View MSA
122793674 5272 Eudicot View MSA
122046284 5273 Angiosperm View MSA
121345634 5274 Embryophyte View MSA
123425946 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.515        
cufflinks 10.034        
cufflinks 6.183        
cufflinks 10.053        
cufflinks 6.038       Low
cufflinks 10.516       High

0 Strain