Gene : RAT5 A. thaliana TAIR10
Primary Identifier:  ? AT5G54640 Defline:  (1 of 13) K11251 - histone H2A (H2A)
Genomic Order:  4922 Name:  ? AT5G54640
Secondary Identifier:  ? PAC:19671214
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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G54640 0.5kb upstream 0.5kb upstream 1516 true Chr5: 22195977-22197492 Arabidopsis thaliana
AT5G54640 0.5kb upstream 0.5kb upstream 500 false Chr5: 22195977-22196476 Arabidopsis thaliana
AT5G54640 0.5kb downstream 0.5kb downstream 1516 true Chr5: 22196477-22197992 Arabidopsis thaliana
AT5G54640 0.5kb downstream 0.5kb downstream 500 false Chr5: 22197493-22197992 Arabidopsis thaliana
AT5G54640 1.0kb upstream 1.0kb upstream 2016 true Chr5: 22195477-22197492 Arabidopsis thaliana
AT5G54640 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22195477-22196476 Arabidopsis thaliana
AT5G54640 1.0kb downstream 1.0kb downstream 2016 true Chr5: 22196477-22198492 Arabidopsis thaliana
AT5G54640 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22197493-22198492 Arabidopsis thaliana
AT5G54640 2.0kb upstream 2.0kb upstream 3016 true Chr5: 22194477-22197492 Arabidopsis thaliana
AT5G54640 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22194477-22196476 Arabidopsis thaliana
AT5G54640 2.0kb downstream 2.0kb downstream 3016 true Chr5: 22196477-22199492 Arabidopsis thaliana
AT5G54640 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22197493-22199492 Arabidopsis thaliana
AT5G54640 5.0kb upstream 5.0kb upstream 6016 true Chr5: 22191477-22197492 Arabidopsis thaliana
AT5G54640 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22191477-22196476 Arabidopsis thaliana
AT5G54640 5.0kb downstream 5.0kb downstream 6016 true Chr5: 22196477-22202492 Arabidopsis thaliana
AT5G54640 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22197493-22202492 Arabidopsis thaliana
AT5G54640 10.0kb upstream 10.0kb upstream 11016 true Chr5: 22186477-22197492 Arabidopsis thaliana
AT5G54640 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22186477-22196476 Arabidopsis thaliana
AT5G54640 10.0kb downstream 10.0kb downstream 11016 true Chr5: 22196477-22207492 Arabidopsis thaliana
AT5G54640 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22197493-22207492 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379636 5261 Brassicaceae View MSA
123840561 5264 Brassicales-Malvales View MSA
124337241 5266 SBM View MSA
124240276 5268 Malvidae View MSA
124063341 5270 Rosid View MSA
123745696 5271 Pentapetalae View MSA
122790342 5272 Eudicot View MSA
122050010 5273 Angiosperm View MSA
121343825 5274 Embryophyte View MSA
123427518 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.652       High
cufflinks 13.602        
cufflinks 10.298       Low
cufflinks 16.434        
cufflinks 11.478        
cufflinks 15.437        

0 Strain