Gene : THE1 A. thaliana TAIR10
Primary Identifier:  ? AT5G54380 Defline:  (1 of 1) PTHR27003:SF37 - INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 4 PROTEIN-RELATED
Genomic Order:  4894 Name:  ? AT5G54380
Secondary Identifier:  ? PAC:19671059
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G54380 0.5kb upstream 0.5kb upstream 3289 true Chr5: 22077092-22080380 Arabidopsis thaliana
AT5G54380 0.5kb upstream 0.5kb upstream 500 false Chr5: 22079881-22080380 Arabidopsis thaliana
AT5G54380 0.5kb downstream 0.5kb downstream 3289 true Chr5: 22076592-22079880 Arabidopsis thaliana
AT5G54380 0.5kb downstream 0.5kb downstream 500 false Chr5: 22076592-22077091 Arabidopsis thaliana
AT5G54380 1.0kb upstream 1.0kb upstream 3789 true Chr5: 22077092-22080880 Arabidopsis thaliana
AT5G54380 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22079881-22080880 Arabidopsis thaliana
AT5G54380 1.0kb downstream 1.0kb downstream 3789 true Chr5: 22076092-22079880 Arabidopsis thaliana
AT5G54380 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22076092-22077091 Arabidopsis thaliana
AT5G54380 2.0kb upstream 2.0kb upstream 4789 true Chr5: 22077092-22081880 Arabidopsis thaliana
AT5G54380 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22079881-22081880 Arabidopsis thaliana
AT5G54380 2.0kb downstream 2.0kb downstream 4789 true Chr5: 22075092-22079880 Arabidopsis thaliana
AT5G54380 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22075092-22077091 Arabidopsis thaliana
AT5G54380 5.0kb upstream 5.0kb upstream 7789 true Chr5: 22077092-22084880 Arabidopsis thaliana
AT5G54380 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22079881-22084880 Arabidopsis thaliana
AT5G54380 5.0kb downstream 5.0kb downstream 7789 true Chr5: 22072092-22079880 Arabidopsis thaliana
AT5G54380 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22072092-22077091 Arabidopsis thaliana
AT5G54380 10.0kb upstream 10.0kb upstream 12789 true Chr5: 22077092-22089880 Arabidopsis thaliana
AT5G54380 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22079881-22089880 Arabidopsis thaliana
AT5G54380 10.0kb downstream 10.0kb downstream 12789 true Chr5: 22067092-22079880 Arabidopsis thaliana
AT5G54380 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22067092-22077091 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372091 5261 Brassicaceae View MSA
123827933 5264 Brassicales-Malvales View MSA
124336929 5266 SBM View MSA
124243067 5268 Malvidae View MSA
124062876 5270 Rosid View MSA
123741188 5271 Pentapetalae View MSA
122788497 5272 Eudicot View MSA
122046314 5273 Angiosperm View MSA
121351522 5274 Embryophyte View MSA
123382204 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 99.308     High High
cufflinks 46.141     High  
cufflinks 54.962     High  
cufflinks 35.693     High Low
cufflinks 54.565     High  
cufflinks 52.973     High  

0 Strain