Gene : AT5G57890 A. thaliana TAIR10
Defline:  (1 of 6) K01658 - anthranilate synthase component II (trpG) Genomic Order:  5276
Name:  ? AT5G57890 Secondary Identifier:  ? PAC:19667267
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana TRPSYN-PWY Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G57890 0.5kb upstream 0.5kb upstream 2773 true Chr5: 23447407-23450179 Arabidopsis thaliana
AT5G57890 0.5kb upstream 0.5kb upstream 500 false Chr5: 23449680-23450179 Arabidopsis thaliana
AT5G57890 0.5kb downstream 0.5kb downstream 2773 true Chr5: 23446907-23449679 Arabidopsis thaliana
AT5G57890 0.5kb downstream 0.5kb downstream 500 false Chr5: 23446907-23447406 Arabidopsis thaliana
AT5G57890 1.0kb upstream 1.0kb upstream 3273 true Chr5: 23447407-23450679 Arabidopsis thaliana
AT5G57890 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23449680-23450679 Arabidopsis thaliana
AT5G57890 1.0kb downstream 1.0kb downstream 3273 true Chr5: 23446407-23449679 Arabidopsis thaliana
AT5G57890 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23446407-23447406 Arabidopsis thaliana
AT5G57890 2.0kb upstream 2.0kb upstream 4273 true Chr5: 23447407-23451679 Arabidopsis thaliana
AT5G57890 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23449680-23451679 Arabidopsis thaliana
AT5G57890 2.0kb downstream 2.0kb downstream 4273 true Chr5: 23445407-23449679 Arabidopsis thaliana
AT5G57890 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23445407-23447406 Arabidopsis thaliana
AT5G57890 5.0kb upstream 5.0kb upstream 7273 true Chr5: 23447407-23454679 Arabidopsis thaliana
AT5G57890 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23449680-23454679 Arabidopsis thaliana
AT5G57890 5.0kb downstream 5.0kb downstream 7273 true Chr5: 23442407-23449679 Arabidopsis thaliana
AT5G57890 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23442407-23447406 Arabidopsis thaliana
AT5G57890 10.0kb upstream 10.0kb upstream 12273 true Chr5: 23447407-23459679 Arabidopsis thaliana
AT5G57890 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23449680-23459679 Arabidopsis thaliana
AT5G57890 10.0kb downstream 10.0kb downstream 12273 true Chr5: 23437407-23449679 Arabidopsis thaliana
AT5G57890 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23437407-23447406 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122331043 5261 Brassicaceae Singleton cluster - no MSA
123836907 5264 Brassicales-Malvales View MSA
124344711 5266 SBM View MSA
124237098 5268 Malvidae View MSA
124061259 5270 Rosid View MSA
123743994 5271 Pentapetalae View MSA
122794235 5272 Eudicot View MSA
122041811 5273 Angiosperm View MSA
121344905 5274 Embryophyte View MSA
123424838 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.499       Low
cufflinks 4.638        
cufflinks 5.294       High
cufflinks 4.845        
cufflinks 4.9        
cufflinks 5.255       High

0 Strain