Gene : CNGC5 A. thaliana TAIR10
Primary Identifier:  ? AT5G57940 Defline:  (1 of 3) PTHR10217:SF500 - CYCLIC NUCLEOTIDE-GATED ION CHANNEL 5-RELATED
Genomic Order:  5281 Name:  ? AT5G57940
Secondary Identifier:  ? PAC:19667030
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G57940 0.5kb upstream 0.5kb upstream 4549 true Chr5: 23456065-23460613 Arabidopsis thaliana
AT5G57940 0.5kb upstream 0.5kb upstream 500 false Chr5: 23456065-23456564 Arabidopsis thaliana
AT5G57940 0.5kb downstream 0.5kb downstream 4549 true Chr5: 23456565-23461113 Arabidopsis thaliana
AT5G57940 0.5kb downstream 0.5kb downstream 500 false Chr5: 23460614-23461113 Arabidopsis thaliana
AT5G57940 1.0kb upstream 1.0kb upstream 5049 true Chr5: 23455565-23460613 Arabidopsis thaliana
AT5G57940 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23455565-23456564 Arabidopsis thaliana
AT5G57940 1.0kb downstream 1.0kb downstream 5049 true Chr5: 23456565-23461613 Arabidopsis thaliana
AT5G57940 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23460614-23461613 Arabidopsis thaliana
AT5G57940 2.0kb upstream 2.0kb upstream 6049 true Chr5: 23454565-23460613 Arabidopsis thaliana
AT5G57940 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23454565-23456564 Arabidopsis thaliana
AT5G57940 2.0kb downstream 2.0kb downstream 6049 true Chr5: 23456565-23462613 Arabidopsis thaliana
AT5G57940 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23460614-23462613 Arabidopsis thaliana
AT5G57940 5.0kb upstream 5.0kb upstream 9049 true Chr5: 23451565-23460613 Arabidopsis thaliana
AT5G57940 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23451565-23456564 Arabidopsis thaliana
AT5G57940 5.0kb downstream 5.0kb downstream 9049 true Chr5: 23456565-23465613 Arabidopsis thaliana
AT5G57940 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23460614-23465613 Arabidopsis thaliana
AT5G57940 10.0kb upstream 10.0kb upstream 14049 true Chr5: 23446565-23460613 Arabidopsis thaliana
AT5G57940 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23446565-23456564 Arabidopsis thaliana
AT5G57940 10.0kb downstream 10.0kb downstream 14049 true Chr5: 23456565-23470613 Arabidopsis thaliana
AT5G57940 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23460614-23470613 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368736 5261 Brassicaceae View MSA
123838006 5264 Brassicales-Malvales View MSA
124340121 5266 SBM View MSA
124238344 5268 Malvidae View MSA
124064062 5270 Rosid View MSA
123748998 5271 Pentapetalae View MSA
122786679 5272 Eudicot View MSA
122043565 5273 Angiosperm View MSA
121351754 5274 Embryophyte View MSA
123428762 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.98        
cufflinks 10.912       High
cufflinks 4.403        
cufflinks 9.225        
cufflinks 3.895        
cufflinks 7.799        

0 Strain