Gene : TCH4 A. thaliana TAIR10
Primary Identifier:  ? AT5G57560 Defline:  (1 of 1) K14504 - xyloglucan:xyloglucosyl transferase TCH4 (TCH4)
Genomic Order:  5236 Name:  ? AT5G57560
Secondary Identifier:  ? PAC:19667263
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G57560 0.5kb upstream 0.5kb upstream 1653 true Chr5: 23307130-23308782 Arabidopsis thaliana
AT5G57560 0.5kb upstream 0.5kb upstream 500 false Chr5: 23308283-23308782 Arabidopsis thaliana
AT5G57560 0.5kb downstream 0.5kb downstream 1653 true Chr5: 23306630-23308282 Arabidopsis thaliana
AT5G57560 0.5kb downstream 0.5kb downstream 500 false Chr5: 23306630-23307129 Arabidopsis thaliana
AT5G57560 1.0kb upstream 1.0kb upstream 2153 true Chr5: 23307130-23309282 Arabidopsis thaliana
AT5G57560 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23308283-23309282 Arabidopsis thaliana
AT5G57560 1.0kb downstream 1.0kb downstream 2153 true Chr5: 23306130-23308282 Arabidopsis thaliana
AT5G57560 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23306130-23307129 Arabidopsis thaliana
AT5G57560 2.0kb upstream 2.0kb upstream 3153 true Chr5: 23307130-23310282 Arabidopsis thaliana
AT5G57560 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23308283-23310282 Arabidopsis thaliana
AT5G57560 2.0kb downstream 2.0kb downstream 3153 true Chr5: 23305130-23308282 Arabidopsis thaliana
AT5G57560 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23305130-23307129 Arabidopsis thaliana
AT5G57560 5.0kb upstream 5.0kb upstream 6153 true Chr5: 23307130-23313282 Arabidopsis thaliana
AT5G57560 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23308283-23313282 Arabidopsis thaliana
AT5G57560 5.0kb downstream 5.0kb downstream 6153 true Chr5: 23302130-23308282 Arabidopsis thaliana
AT5G57560 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23302130-23307129 Arabidopsis thaliana
AT5G57560 10.0kb upstream 10.0kb upstream 11153 true Chr5: 23307130-23318282 Arabidopsis thaliana
AT5G57560 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23308283-23318282 Arabidopsis thaliana
AT5G57560 10.0kb downstream 10.0kb downstream 11153 true Chr5: 23297130-23308282 Arabidopsis thaliana
AT5G57560 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23297130-23307129 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122363023 5261 Brassicaceae View MSA
123840793 5264 Brassicales-Malvales View MSA
124350443 5266 SBM View MSA
124251513 5268 Malvidae View MSA
124074397 5270 Rosid View MSA
123749278 5271 Pentapetalae View MSA
122796709 5272 Eudicot View MSA
122046395 5273 Angiosperm View MSA
121350333 5274 Embryophyte View MSA
123381682 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 314.205     High Low
cufflinks 1186.063     High High
cufflinks 529.937     High  
cufflinks 690.397     High  
cufflinks 600.55     High  
cufflinks 1053.632     High  

0 Strain