Gene : XTH25 A. thaliana TAIR10
Primary Identifier:  ? AT5G57550 Defline:  (1 of 1) PTHR31062//PTHR31062:SF32 - FAMILY NOT NAMED // XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 25-RELATED
Genomic Order:  5235 Name:  ? AT5G57550
Secondary Identifier:  ? PAC:19671077
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G57550 0.5kb upstream 0.5kb upstream 2034 true Chr5: 23304888-23306921 Arabidopsis thaliana
AT5G57550 0.5kb upstream 0.5kb upstream 500 false Chr5: 23306422-23306921 Arabidopsis thaliana
AT5G57550 0.5kb downstream 0.5kb downstream 2034 true Chr5: 23304388-23306421 Arabidopsis thaliana
AT5G57550 0.5kb downstream 0.5kb downstream 500 false Chr5: 23304388-23304887 Arabidopsis thaliana
AT5G57550 1.0kb upstream 1.0kb upstream 2534 true Chr5: 23304888-23307421 Arabidopsis thaliana
AT5G57550 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23306422-23307421 Arabidopsis thaliana
AT5G57550 1.0kb downstream 1.0kb downstream 2534 true Chr5: 23303888-23306421 Arabidopsis thaliana
AT5G57550 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23303888-23304887 Arabidopsis thaliana
AT5G57550 2.0kb upstream 2.0kb upstream 3534 true Chr5: 23304888-23308421 Arabidopsis thaliana
AT5G57550 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23306422-23308421 Arabidopsis thaliana
AT5G57550 2.0kb downstream 2.0kb downstream 3534 true Chr5: 23302888-23306421 Arabidopsis thaliana
AT5G57550 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23302888-23304887 Arabidopsis thaliana
AT5G57550 5.0kb upstream 5.0kb upstream 6534 true Chr5: 23304888-23311421 Arabidopsis thaliana
AT5G57550 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23306422-23311421 Arabidopsis thaliana
AT5G57550 5.0kb downstream 5.0kb downstream 6534 true Chr5: 23299888-23306421 Arabidopsis thaliana
AT5G57550 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23299888-23304887 Arabidopsis thaliana
AT5G57550 10.0kb upstream 10.0kb upstream 11534 true Chr5: 23304888-23316421 Arabidopsis thaliana
AT5G57550 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23306422-23316421 Arabidopsis thaliana
AT5G57550 10.0kb downstream 10.0kb downstream 11534 true Chr5: 23294888-23306421 Arabidopsis thaliana
AT5G57550 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23294888-23304887 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361922 5261 Brassicaceae View MSA
123798272 5264 Brassicales-Malvales View MSA
124295936 5266 SBM View MSA
124251513 5268 Malvidae View MSA
124074397 5270 Rosid View MSA
123749278 5271 Pentapetalae View MSA
122796709 5272 Eudicot View MSA
122046395 5273 Angiosperm View MSA
121350333 5274 Embryophyte View MSA
123381682 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.718        
cufflinks 0.119     Low  
cufflinks 18.744        
cufflinks 0.163     Low  
cufflinks 24.177       High
cufflinks 0.126     Low  

0 Strain