Gene : AT5G57330 A. thaliana TAIR10
Defline:  (1 of 2) PTHR11122:SF11 - ALDOSE 1-EPIMERASE FAMILY PROTEIN-RELATED Genomic Order:  5212
Name:  ? AT5G57330 Secondary Identifier:  ? PAC:19667229
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G57330 0.5kb upstream 0.5kb upstream 3376 true Chr5: 23217714-23221089 Arabidopsis thaliana
AT5G57330 0.5kb upstream 0.5kb upstream 500 false Chr5: 23217714-23218213 Arabidopsis thaliana
AT5G57330 0.5kb downstream 0.5kb downstream 3376 true Chr5: 23218214-23221589 Arabidopsis thaliana
AT5G57330 0.5kb downstream 0.5kb downstream 500 false Chr5: 23221090-23221589 Arabidopsis thaliana
AT5G57330 1.0kb upstream 1.0kb upstream 3876 true Chr5: 23217214-23221089 Arabidopsis thaliana
AT5G57330 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23217214-23218213 Arabidopsis thaliana
AT5G57330 1.0kb downstream 1.0kb downstream 3876 true Chr5: 23218214-23222089 Arabidopsis thaliana
AT5G57330 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23221090-23222089 Arabidopsis thaliana
AT5G57330 2.0kb upstream 2.0kb upstream 4876 true Chr5: 23216214-23221089 Arabidopsis thaliana
AT5G57330 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23216214-23218213 Arabidopsis thaliana
AT5G57330 2.0kb downstream 2.0kb downstream 4876 true Chr5: 23218214-23223089 Arabidopsis thaliana
AT5G57330 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23221090-23223089 Arabidopsis thaliana
AT5G57330 5.0kb upstream 5.0kb upstream 7876 true Chr5: 23213214-23221089 Arabidopsis thaliana
AT5G57330 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23213214-23218213 Arabidopsis thaliana
AT5G57330 5.0kb downstream 5.0kb downstream 7876 true Chr5: 23218214-23226089 Arabidopsis thaliana
AT5G57330 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23221090-23226089 Arabidopsis thaliana
AT5G57330 10.0kb upstream 10.0kb upstream 12876 true Chr5: 23208214-23221089 Arabidopsis thaliana
AT5G57330 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23208214-23218213 Arabidopsis thaliana
AT5G57330 10.0kb downstream 10.0kb downstream 12876 true Chr5: 23218214-23231089 Arabidopsis thaliana
AT5G57330 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23221090-23231089 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376850 5261 Brassicaceae View MSA
123833205 5264 Brassicales-Malvales View MSA
124341529 5266 SBM View MSA
124245730 5268 Malvidae View MSA
124064506 5270 Rosid View MSA
123740956 5271 Pentapetalae View MSA
122787587 5272 Eudicot View MSA
122047038 5273 Angiosperm View MSA
121347358 5274 Embryophyte View MSA
123428689 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.235        
cufflinks 18.966       Low
cufflinks 22.989        
cufflinks 19.867        
cufflinks 26.112     High High
cufflinks 19.131        

0 Strain