Gene : HA3 A. thaliana TAIR10
Primary Identifier:  ? AT5G57350 Defline:  (1 of 6) PTHR24093:SF355 - ATPASE 1, PLASMA MEMBRANE-TYPE-RELATED
Genomic Order:  5215 Name:  ? AT5G57350
Secondary Identifier:  ? PAC:19666203
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0 Pathways

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G57350 0.5kb upstream 0.5kb upstream 6194 true Chr5: 23230879-23237072 Arabidopsis thaliana
AT5G57350 0.5kb upstream 0.5kb upstream 500 false Chr5: 23236573-23237072 Arabidopsis thaliana
AT5G57350 0.5kb downstream 0.5kb downstream 6194 true Chr5: 23230379-23236572 Arabidopsis thaliana
AT5G57350 0.5kb downstream 0.5kb downstream 500 false Chr5: 23230379-23230878 Arabidopsis thaliana
AT5G57350 1.0kb upstream 1.0kb upstream 6694 true Chr5: 23230879-23237572 Arabidopsis thaliana
AT5G57350 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23236573-23237572 Arabidopsis thaliana
AT5G57350 1.0kb downstream 1.0kb downstream 6694 true Chr5: 23229879-23236572 Arabidopsis thaliana
AT5G57350 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23229879-23230878 Arabidopsis thaliana
AT5G57350 2.0kb upstream 2.0kb upstream 7694 true Chr5: 23230879-23238572 Arabidopsis thaliana
AT5G57350 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23236573-23238572 Arabidopsis thaliana
AT5G57350 2.0kb downstream 2.0kb downstream 7694 true Chr5: 23228879-23236572 Arabidopsis thaliana
AT5G57350 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23228879-23230878 Arabidopsis thaliana
AT5G57350 5.0kb upstream 5.0kb upstream 10694 true Chr5: 23230879-23241572 Arabidopsis thaliana
AT5G57350 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23236573-23241572 Arabidopsis thaliana
AT5G57350 5.0kb downstream 5.0kb downstream 10694 true Chr5: 23225879-23236572 Arabidopsis thaliana
AT5G57350 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23225879-23230878 Arabidopsis thaliana
AT5G57350 10.0kb upstream 10.0kb upstream 15694 true Chr5: 23230879-23246572 Arabidopsis thaliana
AT5G57350 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23236573-23246572 Arabidopsis thaliana
AT5G57350 10.0kb downstream 10.0kb downstream 15694 true Chr5: 23220879-23236572 Arabidopsis thaliana
AT5G57350 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23220879-23230878 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122343706 5261 Brassicaceae View MSA
123783821 5264 Brassicales-Malvales View MSA
124282034 5266 SBM View MSA
124136696 5268 Malvidae View MSA
123864514 5270 Rosid View MSA
123751017 5271 Pentapetalae View MSA
122796712 5272 Eudicot View MSA
122050656 5273 Angiosperm View MSA
121349531 5274 Embryophyte View MSA
123428375 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.306        
cufflinks 13.929        
cufflinks 23.125        
cufflinks 12.139        
cufflinks 33.141     High High
cufflinks 6.68       Low

0 Strain