Gene : AT5G57130 A. thaliana TAIR10
Defline:  (1 of 2) PTHR11638//PTHR11638:SF123 - ATP-DEPENDENT CLP PROTEASE // CLP AMINO TERMINAL DOMAIN-CONTAINING PROTEIN Genomic Order:  5191
Name:  ? AT5G57130 Secondary Identifier:  ? PAC:19666243
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G57130 0.5kb upstream 0.5kb upstream 5089 true Chr5: 23144480-23149568 Arabidopsis thaliana
AT5G57130 0.5kb upstream 0.5kb upstream 500 false Chr5: 23144480-23144979 Arabidopsis thaliana
AT5G57130 0.5kb downstream 0.5kb downstream 5089 true Chr5: 23144980-23150068 Arabidopsis thaliana
AT5G57130 0.5kb downstream 0.5kb downstream 500 false Chr5: 23149569-23150068 Arabidopsis thaliana
AT5G57130 1.0kb upstream 1.0kb upstream 5589 true Chr5: 23143980-23149568 Arabidopsis thaliana
AT5G57130 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23143980-23144979 Arabidopsis thaliana
AT5G57130 1.0kb downstream 1.0kb downstream 5589 true Chr5: 23144980-23150568 Arabidopsis thaliana
AT5G57130 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23149569-23150568 Arabidopsis thaliana
AT5G57130 2.0kb upstream 2.0kb upstream 6589 true Chr5: 23142980-23149568 Arabidopsis thaliana
AT5G57130 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23142980-23144979 Arabidopsis thaliana
AT5G57130 2.0kb downstream 2.0kb downstream 6589 true Chr5: 23144980-23151568 Arabidopsis thaliana
AT5G57130 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23149569-23151568 Arabidopsis thaliana
AT5G57130 5.0kb upstream 5.0kb upstream 9589 true Chr5: 23139980-23149568 Arabidopsis thaliana
AT5G57130 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23139980-23144979 Arabidopsis thaliana
AT5G57130 5.0kb downstream 5.0kb downstream 9589 true Chr5: 23144980-23154568 Arabidopsis thaliana
AT5G57130 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23149569-23154568 Arabidopsis thaliana
AT5G57130 10.0kb upstream 10.0kb upstream 14589 true Chr5: 23134980-23149568 Arabidopsis thaliana
AT5G57130 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23134980-23144979 Arabidopsis thaliana
AT5G57130 10.0kb downstream 10.0kb downstream 14589 true Chr5: 23144980-23159568 Arabidopsis thaliana
AT5G57130 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23149569-23159568 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369266 5261 Brassicaceae View MSA
123799747 5264 Brassicales-Malvales View MSA
124348492 5266 SBM View MSA
124244949 5268 Malvidae View MSA
124066175 5270 Rosid View MSA
123751294 5271 Pentapetalae View MSA
122791347 5272 Eudicot View MSA
122049419 5273 Angiosperm View MSA
121351273 5274 Embryophyte View MSA
123382090 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.942        
cufflinks 26.759        
cufflinks 1.823        
cufflinks 26.474        
cufflinks 1.234       Low
cufflinks 28.866        

0 Strain