Gene : LUT2 A. thaliana TAIR10
Primary Identifier:  ? AT5G57030 Defline:  (1 of 1) 5.5.1.18 - Lycopene epsilon-cyclase
Genomic Order:  5179 Name:  ? AT5G57030
Secondary Identifier:  ? PAC:19673230
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana CAROTENOID-PWY Arabidopsis thaliana pathologic  
Athaliana PWY-5175 Arabidopsis thaliana pathologic  
Athaliana PWY-5946 Arabidopsis thaliana pathologic  

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G57030 0.5kb upstream 0.5kb upstream 3289 true Chr5: 23076765-23080053 Arabidopsis thaliana
AT5G57030 0.5kb upstream 0.5kb upstream 500 false Chr5: 23076765-23077264 Arabidopsis thaliana
AT5G57030 0.5kb downstream 0.5kb downstream 3289 true Chr5: 23077265-23080553 Arabidopsis thaliana
AT5G57030 0.5kb downstream 0.5kb downstream 500 false Chr5: 23080054-23080553 Arabidopsis thaliana
AT5G57030 1.0kb upstream 1.0kb upstream 3789 true Chr5: 23076265-23080053 Arabidopsis thaliana
AT5G57030 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23076265-23077264 Arabidopsis thaliana
AT5G57030 1.0kb downstream 1.0kb downstream 3789 true Chr5: 23077265-23081053 Arabidopsis thaliana
AT5G57030 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23080054-23081053 Arabidopsis thaliana
AT5G57030 2.0kb upstream 2.0kb upstream 4789 true Chr5: 23075265-23080053 Arabidopsis thaliana
AT5G57030 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23075265-23077264 Arabidopsis thaliana
AT5G57030 2.0kb downstream 2.0kb downstream 4789 true Chr5: 23077265-23082053 Arabidopsis thaliana
AT5G57030 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23080054-23082053 Arabidopsis thaliana
AT5G57030 5.0kb upstream 5.0kb upstream 7789 true Chr5: 23072265-23080053 Arabidopsis thaliana
AT5G57030 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23072265-23077264 Arabidopsis thaliana
AT5G57030 5.0kb downstream 5.0kb downstream 7789 true Chr5: 23077265-23085053 Arabidopsis thaliana
AT5G57030 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23080054-23085053 Arabidopsis thaliana
AT5G57030 10.0kb upstream 10.0kb upstream 12789 true Chr5: 23067265-23080053 Arabidopsis thaliana
AT5G57030 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23067265-23077264 Arabidopsis thaliana
AT5G57030 10.0kb downstream 10.0kb downstream 12789 true Chr5: 23077265-23090053 Arabidopsis thaliana
AT5G57030 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23080054-23090053 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379674 5261 Brassicaceae View MSA
123834922 5264 Brassicales-Malvales View MSA
124342530 5266 SBM View MSA
124243060 5268 Malvidae View MSA
124068333 5270 Rosid View MSA
123739919 5271 Pentapetalae View MSA
122791667 5272 Eudicot View MSA
122041543 5273 Angiosperm View MSA
121345455 5274 Embryophyte View MSA
123424108 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 38.173     High High
cufflinks 0.946        
cufflinks 33.478     High  
cufflinks 0.92        
cufflinks 24.075        
cufflinks 0.673       Low

0 Strain