Gene : AT5G56940 A. thaliana TAIR10
Defline:  (1 of 1) PTHR12919:SF20 - 28S RIBOSOMAL PROTEIN S16, MITOCHONDRIAL Genomic Order:  5169
Name:  ? AT5G56940 Secondary Identifier:  ? PAC:19667250
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G56940 0.5kb upstream 0.5kb upstream 2126 true Chr5: 23030286-23032411 Arabidopsis thaliana
AT5G56940 0.5kb upstream 0.5kb upstream 500 false Chr5: 23030286-23030785 Arabidopsis thaliana
AT5G56940 0.5kb downstream 0.5kb downstream 2126 true Chr5: 23030786-23032911 Arabidopsis thaliana
AT5G56940 0.5kb downstream 0.5kb downstream 500 false Chr5: 23032412-23032911 Arabidopsis thaliana
AT5G56940 1.0kb upstream 1.0kb upstream 2626 true Chr5: 23029786-23032411 Arabidopsis thaliana
AT5G56940 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23029786-23030785 Arabidopsis thaliana
AT5G56940 1.0kb downstream 1.0kb downstream 2626 true Chr5: 23030786-23033411 Arabidopsis thaliana
AT5G56940 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23032412-23033411 Arabidopsis thaliana
AT5G56940 2.0kb upstream 2.0kb upstream 3626 true Chr5: 23028786-23032411 Arabidopsis thaliana
AT5G56940 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23028786-23030785 Arabidopsis thaliana
AT5G56940 2.0kb downstream 2.0kb downstream 3626 true Chr5: 23030786-23034411 Arabidopsis thaliana
AT5G56940 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23032412-23034411 Arabidopsis thaliana
AT5G56940 5.0kb upstream 5.0kb upstream 6626 true Chr5: 23025786-23032411 Arabidopsis thaliana
AT5G56940 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23025786-23030785 Arabidopsis thaliana
AT5G56940 5.0kb downstream 5.0kb downstream 6626 true Chr5: 23030786-23037411 Arabidopsis thaliana
AT5G56940 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23032412-23037411 Arabidopsis thaliana
AT5G56940 10.0kb upstream 10.0kb upstream 11626 true Chr5: 23020786-23032411 Arabidopsis thaliana
AT5G56940 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23020786-23030785 Arabidopsis thaliana
AT5G56940 10.0kb downstream 10.0kb downstream 11626 true Chr5: 23030786-23042411 Arabidopsis thaliana
AT5G56940 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23032412-23042411 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380268 5261 Brassicaceae View MSA
123831449 5264 Brassicales-Malvales View MSA
124336720 5266 SBM View MSA
124241934 5268 Malvidae View MSA
124065829 5270 Rosid View MSA
123738502 5271 Pentapetalae View MSA
122792819 5272 Eudicot View MSA
122051162 5273 Angiosperm View MSA
121348917 5274 Embryophyte View MSA
123426601 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.252        
cufflinks 17.299        
cufflinks 12.954        
cufflinks 17.115        
cufflinks 11.522       Low
cufflinks 17.981       High

0 Strain