Gene : AT5G56790 A. thaliana TAIR10
Defline:  (1 of 3) PTHR27001//PTHR27001:SF152 - FAMILY NOT NAMED // GENOMIC DNA, CHROMOSOME 3, P1 CLONE:MMM17-RELATED Genomic Order:  5153
Name:  ? AT5G56790 Secondary Identifier:  ? PAC:19670659
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G56790 0.5kb upstream 0.5kb upstream 4098 true Chr5: 22967439-22971536 Arabidopsis thaliana
AT5G56790 0.5kb upstream 0.5kb upstream 500 false Chr5: 22967439-22967938 Arabidopsis thaliana
AT5G56790 0.5kb downstream 0.5kb downstream 4098 true Chr5: 22967939-22972036 Arabidopsis thaliana
AT5G56790 0.5kb downstream 0.5kb downstream 500 false Chr5: 22971537-22972036 Arabidopsis thaliana
AT5G56790 1.0kb upstream 1.0kb upstream 4598 true Chr5: 22966939-22971536 Arabidopsis thaliana
AT5G56790 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22966939-22967938 Arabidopsis thaliana
AT5G56790 1.0kb downstream 1.0kb downstream 4598 true Chr5: 22967939-22972536 Arabidopsis thaliana
AT5G56790 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22971537-22972536 Arabidopsis thaliana
AT5G56790 2.0kb upstream 2.0kb upstream 5598 true Chr5: 22965939-22971536 Arabidopsis thaliana
AT5G56790 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22965939-22967938 Arabidopsis thaliana
AT5G56790 2.0kb downstream 2.0kb downstream 5598 true Chr5: 22967939-22973536 Arabidopsis thaliana
AT5G56790 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22971537-22973536 Arabidopsis thaliana
AT5G56790 5.0kb upstream 5.0kb upstream 8598 true Chr5: 22962939-22971536 Arabidopsis thaliana
AT5G56790 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22962939-22967938 Arabidopsis thaliana
AT5G56790 5.0kb downstream 5.0kb downstream 8598 true Chr5: 22967939-22976536 Arabidopsis thaliana
AT5G56790 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22971537-22976536 Arabidopsis thaliana
AT5G56790 10.0kb upstream 10.0kb upstream 13598 true Chr5: 22957939-22971536 Arabidopsis thaliana
AT5G56790 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22957939-22967938 Arabidopsis thaliana
AT5G56790 10.0kb downstream 10.0kb downstream 13598 true Chr5: 22967939-22981536 Arabidopsis thaliana
AT5G56790 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22971537-22981536 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373144 5261 Brassicaceae View MSA
123841130 5264 Brassicales-Malvales View MSA
124337102 5266 SBM View MSA
124246911 5268 Malvidae View MSA
124075086 5270 Rosid View MSA
123757584 5271 Pentapetalae View MSA
122778617 5272 Eudicot View MSA
122047607 5273 Angiosperm View MSA
121351058 5274 Embryophyte View MSA
123381993 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.209        
cufflinks 18.842       High
cufflinks 7.555        
cufflinks 17.176        
cufflinks 5.476       Low
cufflinks 15.596        

0 Strain