Gene : AT5G56840 A. thaliana TAIR10
Defline:  (1 of 2) PTHR12374//PTHR12374:SF19 - TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED // SUBFAMILY NOT NAMED Genomic Order:  5158
Name:  ? AT5G56840 Secondary Identifier:  ? PAC:19669069
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G56840 0.5kb upstream 0.5kb upstream 2150 true Chr5: 22980193-22982342 Arabidopsis thaliana
AT5G56840 0.5kb upstream 0.5kb upstream 500 false Chr5: 22980193-22980692 Arabidopsis thaliana
AT5G56840 0.5kb downstream 0.5kb downstream 2150 true Chr5: 22980693-22982842 Arabidopsis thaliana
AT5G56840 0.5kb downstream 0.5kb downstream 500 false Chr5: 22982343-22982842 Arabidopsis thaliana
AT5G56840 1.0kb upstream 1.0kb upstream 2650 true Chr5: 22979693-22982342 Arabidopsis thaliana
AT5G56840 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22979693-22980692 Arabidopsis thaliana
AT5G56840 1.0kb downstream 1.0kb downstream 2650 true Chr5: 22980693-22983342 Arabidopsis thaliana
AT5G56840 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22982343-22983342 Arabidopsis thaliana
AT5G56840 2.0kb upstream 2.0kb upstream 3650 true Chr5: 22978693-22982342 Arabidopsis thaliana
AT5G56840 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22978693-22980692 Arabidopsis thaliana
AT5G56840 2.0kb downstream 2.0kb downstream 3650 true Chr5: 22980693-22984342 Arabidopsis thaliana
AT5G56840 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22982343-22984342 Arabidopsis thaliana
AT5G56840 5.0kb upstream 5.0kb upstream 6650 true Chr5: 22975693-22982342 Arabidopsis thaliana
AT5G56840 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22975693-22980692 Arabidopsis thaliana
AT5G56840 5.0kb downstream 5.0kb downstream 6650 true Chr5: 22980693-22987342 Arabidopsis thaliana
AT5G56840 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22982343-22987342 Arabidopsis thaliana
AT5G56840 10.0kb upstream 10.0kb upstream 11650 true Chr5: 22970693-22982342 Arabidopsis thaliana
AT5G56840 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22970693-22980692 Arabidopsis thaliana
AT5G56840 10.0kb downstream 10.0kb downstream 11650 true Chr5: 22980693-22992342 Arabidopsis thaliana
AT5G56840 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22982343-22992342 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361748 5261 Brassicaceae View MSA
123840660 5264 Brassicales-Malvales View MSA
124347680 5266 SBM View MSA
124247089 5268 Malvidae View MSA
124069463 5270 Rosid View MSA
123752773 5271 Pentapetalae View MSA
122794974 5272 Eudicot View MSA
122050347 5273 Angiosperm View MSA
121350990 5274 Embryophyte View MSA
123426863 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.138       Low
cufflinks 7.101        
cufflinks 6.209        
cufflinks 12.86       High
cufflinks 5.686        
cufflinks 2.795        

0 Strain