Gene : GNC A. thaliana TAIR10
Primary Identifier:  ? AT5G56860 Defline:  (1 of 2) PTHR10071//PTHR10071:SF191 - TRANSCRIPTION FACTOR GATA GATA BINDING FACTOR // SUBFAMILY NOT NAMED
Genomic Order:  5160 Name:  ? AT5G56860
Secondary Identifier:  ? PAC:19671977
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G56860 0.5kb upstream 0.5kb upstream 2703 true Chr5: 22989265-22991967 Arabidopsis thaliana
AT5G56860 0.5kb upstream 0.5kb upstream 500 false Chr5: 22991468-22991967 Arabidopsis thaliana
AT5G56860 0.5kb downstream 0.5kb downstream 2703 true Chr5: 22988765-22991467 Arabidopsis thaliana
AT5G56860 0.5kb downstream 0.5kb downstream 500 false Chr5: 22988765-22989264 Arabidopsis thaliana
AT5G56860 1.0kb upstream 1.0kb upstream 3203 true Chr5: 22989265-22992467 Arabidopsis thaliana
AT5G56860 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22991468-22992467 Arabidopsis thaliana
AT5G56860 1.0kb downstream 1.0kb downstream 3203 true Chr5: 22988265-22991467 Arabidopsis thaliana
AT5G56860 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22988265-22989264 Arabidopsis thaliana
AT5G56860 2.0kb upstream 2.0kb upstream 4203 true Chr5: 22989265-22993467 Arabidopsis thaliana
AT5G56860 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22991468-22993467 Arabidopsis thaliana
AT5G56860 2.0kb downstream 2.0kb downstream 4203 true Chr5: 22987265-22991467 Arabidopsis thaliana
AT5G56860 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22987265-22989264 Arabidopsis thaliana
AT5G56860 5.0kb upstream 5.0kb upstream 7203 true Chr5: 22989265-22996467 Arabidopsis thaliana
AT5G56860 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22991468-22996467 Arabidopsis thaliana
AT5G56860 5.0kb downstream 5.0kb downstream 7203 true Chr5: 22984265-22991467 Arabidopsis thaliana
AT5G56860 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22984265-22989264 Arabidopsis thaliana
AT5G56860 10.0kb upstream 10.0kb upstream 12203 true Chr5: 22989265-23001467 Arabidopsis thaliana
AT5G56860 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22991468-23001467 Arabidopsis thaliana
AT5G56860 10.0kb downstream 10.0kb downstream 12203 true Chr5: 22979265-22991467 Arabidopsis thaliana
AT5G56860 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22979265-22989264 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377176 5261 Brassicaceae View MSA
123840766 5264 Brassicales-Malvales View MSA
124351618 5266 SBM View MSA
124250458 5268 Malvidae View MSA
124071935 5270 Rosid View MSA
123749447 5271 Pentapetalae View MSA
122796147 5272 Eudicot View MSA
122045626 5273 Angiosperm View MSA
121350500 5274 Embryophyte View MSA
123428177 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.404        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 10.342        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 5.918        
cufflinks 0.015     Low Low

0 Strain