Gene : AT5G56720 A. thaliana TAIR10
Defline:  (1 of 1) PTHR23382//PTHR23382:SF5 - MALATE DEHYDROGENASE // MALATE DEHYDROGENASE Genomic Order:  5146
Name:  ? AT5G56720 Secondary Identifier:  ? PAC:19667139
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Sequence Feature Displayer

Ontology Annotation Displayer

7 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana GLUCONEO-PWY Arabidopsis thaliana pathologic  
Athaliana GLYOXYLATE-BYPASS Arabidopsis thaliana pathologic  
Athaliana PWY-5464 Arabidopsis thaliana pathologic  
Athaliana PWY-561 Arabidopsis thaliana pathologic  
Athaliana PWY-5690 Arabidopsis thaliana pathologic  
Athaliana PWY66-399 Arabidopsis thaliana pathologic  
Athaliana PWY-7115 Arabidopsis thaliana pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G56720 0.5kb upstream 0.5kb upstream 1682 true Chr5: 22945037-22946718 Arabidopsis thaliana
AT5G56720 0.5kb upstream 0.5kb upstream 500 false Chr5: 22945037-22945536 Arabidopsis thaliana
AT5G56720 0.5kb downstream 0.5kb downstream 1682 true Chr5: 22945537-22947218 Arabidopsis thaliana
AT5G56720 0.5kb downstream 0.5kb downstream 500 false Chr5: 22946719-22947218 Arabidopsis thaliana
AT5G56720 1.0kb upstream 1.0kb upstream 2182 true Chr5: 22944537-22946718 Arabidopsis thaliana
AT5G56720 1.0kb upstream 1.0kb upstream 1000 false Chr5: 22944537-22945536 Arabidopsis thaliana
AT5G56720 1.0kb downstream 1.0kb downstream 2182 true Chr5: 22945537-22947718 Arabidopsis thaliana
AT5G56720 1.0kb downstream 1.0kb downstream 1000 false Chr5: 22946719-22947718 Arabidopsis thaliana
AT5G56720 2.0kb upstream 2.0kb upstream 3182 true Chr5: 22943537-22946718 Arabidopsis thaliana
AT5G56720 2.0kb upstream 2.0kb upstream 2000 false Chr5: 22943537-22945536 Arabidopsis thaliana
AT5G56720 2.0kb downstream 2.0kb downstream 3182 true Chr5: 22945537-22948718 Arabidopsis thaliana
AT5G56720 2.0kb downstream 2.0kb downstream 2000 false Chr5: 22946719-22948718 Arabidopsis thaliana
AT5G56720 5.0kb upstream 5.0kb upstream 6182 true Chr5: 22940537-22946718 Arabidopsis thaliana
AT5G56720 5.0kb upstream 5.0kb upstream 5000 false Chr5: 22940537-22945536 Arabidopsis thaliana
AT5G56720 5.0kb downstream 5.0kb downstream 6182 true Chr5: 22945537-22951718 Arabidopsis thaliana
AT5G56720 5.0kb downstream 5.0kb downstream 5000 false Chr5: 22946719-22951718 Arabidopsis thaliana
AT5G56720 10.0kb upstream 10.0kb upstream 11182 true Chr5: 22935537-22946718 Arabidopsis thaliana
AT5G56720 10.0kb upstream 10.0kb upstream 10000 false Chr5: 22935537-22945536 Arabidopsis thaliana
AT5G56720 10.0kb downstream 10.0kb downstream 11182 true Chr5: 22945537-22956718 Arabidopsis thaliana
AT5G56720 10.0kb downstream 10.0kb downstream 10000 false Chr5: 22946719-22956718 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361174 5261 Brassicaceae View MSA
123830714 5264 Brassicales-Malvales View MSA
124349239 5266 SBM View MSA
124248989 5268 Malvidae View MSA
124071542 5270 Rosid View MSA
123746984 5271 Pentapetalae View MSA
122786587 5272 Eudicot View MSA
122050336 5273 Angiosperm View MSA
121345674 5274 Embryophyte View MSA
123426378 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.366        
cufflinks 8.563       High
cufflinks 1.111        
cufflinks 6.134        
cufflinks 0.719       Low
cufflinks 7.131        

0 Strain