Gene : AT5G59600 A. thaliana TAIR10
Defline:  (1 of 185) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  5456
Name:  ? AT5G59600 Secondary Identifier:  ? PAC:19667816
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G59600 0.5kb upstream 0.5kb upstream 2526 true Chr5: 24011000-24013525 Arabidopsis thaliana
AT5G59600 0.5kb upstream 0.5kb upstream 500 false Chr5: 24013026-24013525 Arabidopsis thaliana
AT5G59600 0.5kb downstream 0.5kb downstream 2526 true Chr5: 24010500-24013025 Arabidopsis thaliana
AT5G59600 0.5kb downstream 0.5kb downstream 500 false Chr5: 24010500-24010999 Arabidopsis thaliana
AT5G59600 1.0kb upstream 1.0kb upstream 3026 true Chr5: 24011000-24014025 Arabidopsis thaliana
AT5G59600 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24013026-24014025 Arabidopsis thaliana
AT5G59600 1.0kb downstream 1.0kb downstream 3026 true Chr5: 24010000-24013025 Arabidopsis thaliana
AT5G59600 1.0kb downstream 1.0kb downstream 1000 false Chr5: 24010000-24010999 Arabidopsis thaliana
AT5G59600 2.0kb upstream 2.0kb upstream 4026 true Chr5: 24011000-24015025 Arabidopsis thaliana
AT5G59600 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24013026-24015025 Arabidopsis thaliana
AT5G59600 2.0kb downstream 2.0kb downstream 4026 true Chr5: 24009000-24013025 Arabidopsis thaliana
AT5G59600 2.0kb downstream 2.0kb downstream 2000 false Chr5: 24009000-24010999 Arabidopsis thaliana
AT5G59600 5.0kb upstream 5.0kb upstream 7026 true Chr5: 24011000-24018025 Arabidopsis thaliana
AT5G59600 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24013026-24018025 Arabidopsis thaliana
AT5G59600 5.0kb downstream 5.0kb downstream 7026 true Chr5: 24006000-24013025 Arabidopsis thaliana
AT5G59600 5.0kb downstream 5.0kb downstream 5000 false Chr5: 24006000-24010999 Arabidopsis thaliana
AT5G59600 10.0kb upstream 10.0kb upstream 12026 true Chr5: 24011000-24023025 Arabidopsis thaliana
AT5G59600 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24013026-24023025 Arabidopsis thaliana
AT5G59600 10.0kb downstream 10.0kb downstream 12026 true Chr5: 24001000-24013025 Arabidopsis thaliana
AT5G59600 10.0kb downstream 10.0kb downstream 10000 false Chr5: 24001000-24010999 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364921 5261 Brassicaceae View MSA
123841514 5264 Brassicales-Malvales View MSA
124345869 5266 SBM View MSA
124254495 5268 Malvidae View MSA
124070101 5270 Rosid View MSA
123753779 5271 Pentapetalae View MSA
122797667 5272 Eudicot View MSA
122051669 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351733 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.103        
cufflinks 1.042        
cufflinks 1.047        
cufflinks 0.951        
cufflinks 0.777       Low
cufflinks 0.978        

0 Strain