Gene : AT5G59550 A. thaliana TAIR10
Defline:  (1 of 2) PTHR22763//PTHR22763:SF42 - RING ZINC FINGER PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  5451
Name:  ? AT5G59550 Secondary Identifier:  ? PAC:19668545
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-7511 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G59550 0.5kb upstream 0.5kb upstream 2035 true Chr5: 23998259-24000293 Arabidopsis thaliana
AT5G59550 0.5kb upstream 0.5kb upstream 500 false Chr5: 23999794-24000293 Arabidopsis thaliana
AT5G59550 0.5kb downstream 0.5kb downstream 2035 true Chr5: 23997759-23999793 Arabidopsis thaliana
AT5G59550 0.5kb downstream 0.5kb downstream 500 false Chr5: 23997759-23998258 Arabidopsis thaliana
AT5G59550 1.0kb upstream 1.0kb upstream 2535 true Chr5: 23998259-24000793 Arabidopsis thaliana
AT5G59550 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23999794-24000793 Arabidopsis thaliana
AT5G59550 1.0kb downstream 1.0kb downstream 2535 true Chr5: 23997259-23999793 Arabidopsis thaliana
AT5G59550 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23997259-23998258 Arabidopsis thaliana
AT5G59550 2.0kb upstream 2.0kb upstream 3535 true Chr5: 23998259-24001793 Arabidopsis thaliana
AT5G59550 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23999794-24001793 Arabidopsis thaliana
AT5G59550 2.0kb downstream 2.0kb downstream 3535 true Chr5: 23996259-23999793 Arabidopsis thaliana
AT5G59550 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23996259-23998258 Arabidopsis thaliana
AT5G59550 5.0kb upstream 5.0kb upstream 6535 true Chr5: 23998259-24004793 Arabidopsis thaliana
AT5G59550 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23999794-24004793 Arabidopsis thaliana
AT5G59550 5.0kb downstream 5.0kb downstream 6535 true Chr5: 23993259-23999793 Arabidopsis thaliana
AT5G59550 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23993259-23998258 Arabidopsis thaliana
AT5G59550 10.0kb upstream 10.0kb upstream 11535 true Chr5: 23998259-24009793 Arabidopsis thaliana
AT5G59550 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23999794-24009793 Arabidopsis thaliana
AT5G59550 10.0kb downstream 10.0kb downstream 11535 true Chr5: 23988259-23999793 Arabidopsis thaliana
AT5G59550 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23988259-23998258 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376466 5261 Brassicaceae View MSA
123838117 5264 Brassicales-Malvales View MSA
124341456 5266 SBM View MSA
124249586 5268 Malvidae View MSA
124073026 5270 Rosid View MSA
123745848 5271 Pentapetalae View MSA
122795555 5272 Eudicot View MSA
122050385 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121349521 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.076        
cufflinks 175.194     High  
cufflinks 45.24     High  
cufflinks 163.999     High  
cufflinks 21.028       Low
cufflinks 189.211     High  

0 Strain