Gene : SRR1 A. thaliana TAIR10

Primary Identifier:  ? AT5G59560 Defline:  (1 of 1) PTHR28626//PTHR28626:SF3 - FAMILY NOT NAMED // SRR1-LIKE PROTEIN
Genomic Order:  5452 Name:  ? AT5G59560
Secondary Identifier:  ? PAC:19672806

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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G59560 0.5kb upstream 0.5kb upstream 1902 true Chr5: 24000556-24002457 Arabidopsis thaliana
AT5G59560 0.5kb upstream 0.5kb upstream 500 false Chr5: 24001958-24002457 Arabidopsis thaliana
AT5G59560 0.5kb downstream 0.5kb downstream 1902 true Chr5: 24000056-24001957 Arabidopsis thaliana
AT5G59560 0.5kb downstream 0.5kb downstream 500 false Chr5: 24000056-24000555 Arabidopsis thaliana
AT5G59560 1.0kb upstream 1.0kb upstream 2402 true Chr5: 24000556-24002957 Arabidopsis thaliana
AT5G59560 1.0kb upstream 1.0kb upstream 1000 false Chr5: 24001958-24002957 Arabidopsis thaliana
AT5G59560 1.0kb downstream 1.0kb downstream 2402 true Chr5: 23999556-24001957 Arabidopsis thaliana
AT5G59560 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23999556-24000555 Arabidopsis thaliana
AT5G59560 2.0kb upstream 2.0kb upstream 3402 true Chr5: 24000556-24003957 Arabidopsis thaliana
AT5G59560 2.0kb upstream 2.0kb upstream 2000 false Chr5: 24001958-24003957 Arabidopsis thaliana
AT5G59560 2.0kb downstream 2.0kb downstream 3402 true Chr5: 23998556-24001957 Arabidopsis thaliana
AT5G59560 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23998556-24000555 Arabidopsis thaliana
AT5G59560 5.0kb upstream 5.0kb upstream 6402 true Chr5: 24000556-24006957 Arabidopsis thaliana
AT5G59560 5.0kb upstream 5.0kb upstream 5000 false Chr5: 24001958-24006957 Arabidopsis thaliana
AT5G59560 5.0kb downstream 5.0kb downstream 6402 true Chr5: 23995556-24001957 Arabidopsis thaliana
AT5G59560 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23995556-24000555 Arabidopsis thaliana
AT5G59560 10.0kb upstream 10.0kb upstream 11402 true Chr5: 24000556-24011957 Arabidopsis thaliana
AT5G59560 10.0kb upstream 10.0kb upstream 10000 false Chr5: 24001958-24011957 Arabidopsis thaliana
AT5G59560 10.0kb downstream 10.0kb downstream 11402 true Chr5: 23990556-24001957 Arabidopsis thaliana
AT5G59560 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23990556-24000555 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369574 5261 Brassicaceae View MSA
123833094 5264 Brassicales-Malvales View MSA
124346223 5266 SBM View MSA
124239189 5268 Malvidae View MSA
124062185 5270 Rosid View MSA
123738152 5271 Pentapetalae View MSA
122785671 5272 Eudicot View MSA
122046213 5273 Angiosperm View MSA
121347995 5274 Embryophyte View MSA
123428800 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.516        
cufflinks 9.88        
cufflinks 4.142        
cufflinks 8.581        
cufflinks 3.631       Low
cufflinks 9.576        

0 Strain