Gene : AT5G59410 A. thaliana TAIR10
Defline:  (1 of 2) PTHR12906 - PROTEIN C20ORF24 RAB5-INTERACTING PROTEIN Genomic Order:  5437
Name:  ? AT5G59410 Secondary Identifier:  ? PAC:19672667
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G59410 0.5kb upstream 0.5kb upstream 1806 true Chr5: 23959573-23961378 Arabidopsis thaliana
AT5G59410 0.5kb upstream 0.5kb upstream 500 false Chr5: 23960879-23961378 Arabidopsis thaliana
AT5G59410 0.5kb downstream 0.5kb downstream 1806 true Chr5: 23959073-23960878 Arabidopsis thaliana
AT5G59410 0.5kb downstream 0.5kb downstream 500 false Chr5: 23959073-23959572 Arabidopsis thaliana
AT5G59410 1.0kb upstream 1.0kb upstream 2306 true Chr5: 23959573-23961878 Arabidopsis thaliana
AT5G59410 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23960879-23961878 Arabidopsis thaliana
AT5G59410 1.0kb downstream 1.0kb downstream 2306 true Chr5: 23958573-23960878 Arabidopsis thaliana
AT5G59410 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23958573-23959572 Arabidopsis thaliana
AT5G59410 2.0kb upstream 2.0kb upstream 3306 true Chr5: 23959573-23962878 Arabidopsis thaliana
AT5G59410 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23960879-23962878 Arabidopsis thaliana
AT5G59410 2.0kb downstream 2.0kb downstream 3306 true Chr5: 23957573-23960878 Arabidopsis thaliana
AT5G59410 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23957573-23959572 Arabidopsis thaliana
AT5G59410 5.0kb upstream 5.0kb upstream 6306 true Chr5: 23959573-23965878 Arabidopsis thaliana
AT5G59410 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23960879-23965878 Arabidopsis thaliana
AT5G59410 5.0kb downstream 5.0kb downstream 6306 true Chr5: 23954573-23960878 Arabidopsis thaliana
AT5G59410 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23954573-23959572 Arabidopsis thaliana
AT5G59410 10.0kb upstream 10.0kb upstream 11306 true Chr5: 23959573-23970878 Arabidopsis thaliana
AT5G59410 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23960879-23970878 Arabidopsis thaliana
AT5G59410 10.0kb downstream 10.0kb downstream 11306 true Chr5: 23949573-23960878 Arabidopsis thaliana
AT5G59410 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23949573-23959572 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376820 5261 Brassicaceae View MSA
123840089 5264 Brassicales-Malvales View MSA
124343547 5266 SBM View MSA
124253379 5268 Malvidae View MSA
124065387 5270 Rosid View MSA
123738853 5271 Pentapetalae View MSA
122789516 5272 Eudicot View MSA
122045446 5273 Angiosperm View MSA
121347284 5274 Embryophyte View MSA
123427453 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.318        
cufflinks 10.331        
cufflinks 6.848       Low
cufflinks 9.939        
cufflinks 7.135        
cufflinks 10.805       High

0 Strain