Gene : SBT4.12 A. thaliana TAIR10
Primary Identifier:  ? AT5G59090 Defline:  (1 of 11) PTHR10795:SF399 - CUCUMISIN-LIKE-RELATED
Genomic Order:  5403 Name:  ? AT5G59090
Secondary Identifier:  ? PAC:19668109
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G59090 0.5kb upstream 0.5kb upstream 3871 true Chr5: 23851905-23855775 Arabidopsis thaliana
AT5G59090 0.5kb upstream 0.5kb upstream 500 false Chr5: 23855276-23855775 Arabidopsis thaliana
AT5G59090 0.5kb downstream 0.5kb downstream 3871 true Chr5: 23851405-23855275 Arabidopsis thaliana
AT5G59090 0.5kb downstream 0.5kb downstream 500 false Chr5: 23851405-23851904 Arabidopsis thaliana
AT5G59090 1.0kb upstream 1.0kb upstream 4371 true Chr5: 23851905-23856275 Arabidopsis thaliana
AT5G59090 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23855276-23856275 Arabidopsis thaliana
AT5G59090 1.0kb downstream 1.0kb downstream 4371 true Chr5: 23850905-23855275 Arabidopsis thaliana
AT5G59090 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23850905-23851904 Arabidopsis thaliana
AT5G59090 2.0kb upstream 2.0kb upstream 5371 true Chr5: 23851905-23857275 Arabidopsis thaliana
AT5G59090 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23855276-23857275 Arabidopsis thaliana
AT5G59090 2.0kb downstream 2.0kb downstream 5371 true Chr5: 23849905-23855275 Arabidopsis thaliana
AT5G59090 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23849905-23851904 Arabidopsis thaliana
AT5G59090 5.0kb upstream 5.0kb upstream 8371 true Chr5: 23851905-23860275 Arabidopsis thaliana
AT5G59090 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23855276-23860275 Arabidopsis thaliana
AT5G59090 5.0kb downstream 5.0kb downstream 8371 true Chr5: 23846905-23855275 Arabidopsis thaliana
AT5G59090 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23846905-23851904 Arabidopsis thaliana
AT5G59090 10.0kb upstream 10.0kb upstream 13371 true Chr5: 23851905-23865275 Arabidopsis thaliana
AT5G59090 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23855276-23865275 Arabidopsis thaliana
AT5G59090 10.0kb downstream 10.0kb downstream 13371 true Chr5: 23841905-23855275 Arabidopsis thaliana
AT5G59090 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23841905-23851904 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122367329 5261 Brassicaceae View MSA
123840642 5264 Brassicales-Malvales View MSA
124350203 5266 SBM View MSA
124254067 5268 Malvidae View MSA
124074709 5270 Rosid View MSA
123751509 5271 Pentapetalae View MSA
122797256 5272 Eudicot View MSA
122051606 5273 Angiosperm View MSA
121349729 5274 Embryophyte View MSA
123428602 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.006     Low  
cufflinks 2.379        
cufflinks 0.001     Low Low
cufflinks 3.42        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 13.694        

0 Strain