Gene : AT5G58900 A. thaliana TAIR10
Defline:  (1 of 8) PTHR24078:SF261 - DNAJ (HSP40) HOMOLOG, SUBFAMILY A, MEMBER 3A Genomic Order:  5384
Name:  ? AT5G58900 Secondary Identifier:  ? PAC:19666877
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G58900 0.5kb upstream 0.5kb upstream 2712 true Chr5: 23783123-23785834 Arabidopsis thaliana
AT5G58900 0.5kb upstream 0.5kb upstream 500 false Chr5: 23785335-23785834 Arabidopsis thaliana
AT5G58900 0.5kb downstream 0.5kb downstream 2712 true Chr5: 23782623-23785334 Arabidopsis thaliana
AT5G58900 0.5kb downstream 0.5kb downstream 500 false Chr5: 23782623-23783122 Arabidopsis thaliana
AT5G58900 1.0kb upstream 1.0kb upstream 3212 true Chr5: 23783123-23786334 Arabidopsis thaliana
AT5G58900 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23785335-23786334 Arabidopsis thaliana
AT5G58900 1.0kb downstream 1.0kb downstream 3212 true Chr5: 23782123-23785334 Arabidopsis thaliana
AT5G58900 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23782123-23783122 Arabidopsis thaliana
AT5G58900 2.0kb upstream 2.0kb upstream 4212 true Chr5: 23783123-23787334 Arabidopsis thaliana
AT5G58900 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23785335-23787334 Arabidopsis thaliana
AT5G58900 2.0kb downstream 2.0kb downstream 4212 true Chr5: 23781123-23785334 Arabidopsis thaliana
AT5G58900 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23781123-23783122 Arabidopsis thaliana
AT5G58900 5.0kb upstream 5.0kb upstream 7212 true Chr5: 23783123-23790334 Arabidopsis thaliana
AT5G58900 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23785335-23790334 Arabidopsis thaliana
AT5G58900 5.0kb downstream 5.0kb downstream 7212 true Chr5: 23778123-23785334 Arabidopsis thaliana
AT5G58900 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23778123-23783122 Arabidopsis thaliana
AT5G58900 10.0kb upstream 10.0kb upstream 12212 true Chr5: 23783123-23795334 Arabidopsis thaliana
AT5G58900 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23785335-23795334 Arabidopsis thaliana
AT5G58900 10.0kb downstream 10.0kb downstream 12212 true Chr5: 23773123-23785334 Arabidopsis thaliana
AT5G58900 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23773123-23783122 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376369 5261 Brassicaceae View MSA
123838632 5264 Brassicales-Malvales View MSA
124347524 5266 SBM View MSA
124243756 5268 Malvidae View MSA
124070601 5270 Rosid View MSA
123748936 5271 Pentapetalae View MSA
122794649 5272 Eudicot View MSA
122047094 5273 Angiosperm View MSA
121310689 5274 Embryophyte View MSA
123426863 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.736       Low
cufflinks 22.889       High
cufflinks 13.395        
cufflinks 15.073        
cufflinks 10.677        
cufflinks 19.639        

0 Strain