Gene : AT5G58630 A. thaliana TAIR10
Defline:  (1 of 2) PTHR35499:SF2 - ALC-INTERACTING PROTEIN 1 Genomic Order:  5355
Name:  ? AT5G58630 Secondary Identifier:  ? PAC:19669497
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G58630 0.5kb upstream 0.5kb upstream 1845 true Chr5: 23696108-23697952 Arabidopsis thaliana
AT5G58630 0.5kb upstream 0.5kb upstream 500 false Chr5: 23697453-23697952 Arabidopsis thaliana
AT5G58630 0.5kb downstream 0.5kb downstream 1845 true Chr5: 23695608-23697452 Arabidopsis thaliana
AT5G58630 0.5kb downstream 0.5kb downstream 500 false Chr5: 23695608-23696107 Arabidopsis thaliana
AT5G58630 1.0kb upstream 1.0kb upstream 2345 true Chr5: 23696108-23698452 Arabidopsis thaliana
AT5G58630 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23697453-23698452 Arabidopsis thaliana
AT5G58630 1.0kb downstream 1.0kb downstream 2345 true Chr5: 23695108-23697452 Arabidopsis thaliana
AT5G58630 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23695108-23696107 Arabidopsis thaliana
AT5G58630 2.0kb upstream 2.0kb upstream 3345 true Chr5: 23696108-23699452 Arabidopsis thaliana
AT5G58630 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23697453-23699452 Arabidopsis thaliana
AT5G58630 2.0kb downstream 2.0kb downstream 3345 true Chr5: 23694108-23697452 Arabidopsis thaliana
AT5G58630 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23694108-23696107 Arabidopsis thaliana
AT5G58630 5.0kb upstream 5.0kb upstream 6345 true Chr5: 23696108-23702452 Arabidopsis thaliana
AT5G58630 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23697453-23702452 Arabidopsis thaliana
AT5G58630 5.0kb downstream 5.0kb downstream 6345 true Chr5: 23691108-23697452 Arabidopsis thaliana
AT5G58630 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23691108-23696107 Arabidopsis thaliana
AT5G58630 10.0kb upstream 10.0kb upstream 11345 true Chr5: 23696108-23707452 Arabidopsis thaliana
AT5G58630 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23697453-23707452 Arabidopsis thaliana
AT5G58630 10.0kb downstream 10.0kb downstream 11345 true Chr5: 23686108-23697452 Arabidopsis thaliana
AT5G58630 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23686108-23696107 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374551 5261 Brassicaceae View MSA
123834896 5264 Brassicales-Malvales View MSA
124321977 5266 SBM View MSA
124253688 5268 Malvidae View MSA
124062218 5270 Rosid View MSA
123751087 5271 Pentapetalae View MSA
122789400 5272 Eudicot View MSA
122050315 5273 Angiosperm View MSA
121311850 5274 Embryophyte View MSA
123349090 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.106     Low  
cufflinks 3.924        
cufflinks 0.108     Low  
cufflinks 2.521        
cufflinks 0.12     Low  
cufflinks 4.167       High

0 Strain