Gene : PMR5 A. thaliana TAIR10
Primary Identifier:  ? AT5G58600 Defline:  (1 of 2) PTHR32285:SF14 - PROTEIN PMR5-RELATED
Genomic Order:  5352 Name:  ? AT5G58600
Secondary Identifier:  ? PAC:19665925
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0 Pathways

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G58600 0.5kb upstream 0.5kb upstream 2435 true Chr5: 23683791-23686225 Arabidopsis thaliana
AT5G58600 0.5kb upstream 0.5kb upstream 500 false Chr5: 23685726-23686225 Arabidopsis thaliana
AT5G58600 0.5kb downstream 0.5kb downstream 2435 true Chr5: 23683291-23685725 Arabidopsis thaliana
AT5G58600 0.5kb downstream 0.5kb downstream 500 false Chr5: 23683291-23683790 Arabidopsis thaliana
AT5G58600 1.0kb upstream 1.0kb upstream 2935 true Chr5: 23683791-23686725 Arabidopsis thaliana
AT5G58600 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23685726-23686725 Arabidopsis thaliana
AT5G58600 1.0kb downstream 1.0kb downstream 2935 true Chr5: 23682791-23685725 Arabidopsis thaliana
AT5G58600 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23682791-23683790 Arabidopsis thaliana
AT5G58600 2.0kb upstream 2.0kb upstream 3935 true Chr5: 23683791-23687725 Arabidopsis thaliana
AT5G58600 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23685726-23687725 Arabidopsis thaliana
AT5G58600 2.0kb downstream 2.0kb downstream 3935 true Chr5: 23681791-23685725 Arabidopsis thaliana
AT5G58600 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23681791-23683790 Arabidopsis thaliana
AT5G58600 5.0kb upstream 5.0kb upstream 6935 true Chr5: 23683791-23690725 Arabidopsis thaliana
AT5G58600 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23685726-23690725 Arabidopsis thaliana
AT5G58600 5.0kb downstream 5.0kb downstream 6935 true Chr5: 23678791-23685725 Arabidopsis thaliana
AT5G58600 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23678791-23683790 Arabidopsis thaliana
AT5G58600 10.0kb upstream 10.0kb upstream 11935 true Chr5: 23683791-23695725 Arabidopsis thaliana
AT5G58600 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23685726-23695725 Arabidopsis thaliana
AT5G58600 10.0kb downstream 10.0kb downstream 11935 true Chr5: 23673791-23685725 Arabidopsis thaliana
AT5G58600 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23673791-23683790 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365808 5261 Brassicaceae View MSA
123831575 5264 Brassicales-Malvales View MSA
124339206 5266 SBM View MSA
124237594 5268 Malvidae View MSA
124066732 5270 Rosid View MSA
123736595 5271 Pentapetalae View MSA
122792961 5272 Eudicot View MSA
122042931 5273 Angiosperm View MSA
123428901 5275 Viridiplantae View MSA
121310047 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.56       Low
cufflinks 6.88       High
cufflinks 5.046        
cufflinks 6.04        
cufflinks 5.382        
cufflinks 6.534        

0 Strain