Gene : AT5G58420 A. thaliana TAIR10
Defline:  (1 of 3) K02987 - small subunit ribosomal protein S4e (RP-S4e, RPS4) Genomic Order:  5333
Name:  ? AT5G58420 Secondary Identifier:  ? PAC:19667821
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G58420 0.5kb upstream 0.5kb upstream 2089 true Chr5: 23619006-23621094 Arabidopsis thaliana
AT5G58420 0.5kb upstream 0.5kb upstream 500 false Chr5: 23619006-23619505 Arabidopsis thaliana
AT5G58420 0.5kb downstream 0.5kb downstream 2089 true Chr5: 23619506-23621594 Arabidopsis thaliana
AT5G58420 0.5kb downstream 0.5kb downstream 500 false Chr5: 23621095-23621594 Arabidopsis thaliana
AT5G58420 1.0kb upstream 1.0kb upstream 2589 true Chr5: 23618506-23621094 Arabidopsis thaliana
AT5G58420 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23618506-23619505 Arabidopsis thaliana
AT5G58420 1.0kb downstream 1.0kb downstream 2589 true Chr5: 23619506-23622094 Arabidopsis thaliana
AT5G58420 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23621095-23622094 Arabidopsis thaliana
AT5G58420 2.0kb upstream 2.0kb upstream 3589 true Chr5: 23617506-23621094 Arabidopsis thaliana
AT5G58420 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23617506-23619505 Arabidopsis thaliana
AT5G58420 2.0kb downstream 2.0kb downstream 3589 true Chr5: 23619506-23623094 Arabidopsis thaliana
AT5G58420 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23621095-23623094 Arabidopsis thaliana
AT5G58420 5.0kb upstream 5.0kb upstream 6589 true Chr5: 23614506-23621094 Arabidopsis thaliana
AT5G58420 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23614506-23619505 Arabidopsis thaliana
AT5G58420 5.0kb downstream 5.0kb downstream 6589 true Chr5: 23619506-23626094 Arabidopsis thaliana
AT5G58420 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23621095-23626094 Arabidopsis thaliana
AT5G58420 10.0kb upstream 10.0kb upstream 11589 true Chr5: 23609506-23621094 Arabidopsis thaliana
AT5G58420 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23609506-23619505 Arabidopsis thaliana
AT5G58420 10.0kb downstream 10.0kb downstream 11589 true Chr5: 23619506-23631094 Arabidopsis thaliana
AT5G58420 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23621095-23631094 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380883 5261 Brassicaceae View MSA
123838802 5264 Brassicales-Malvales View MSA
124336742 5266 SBM View MSA
124243857 5268 Malvidae View MSA
124070579 5270 Rosid View MSA
123750810 5271 Pentapetalae View MSA
122793916 5272 Eudicot View MSA
122046993 5273 Angiosperm View MSA
121344969 5274 Embryophyte View MSA
123426872 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 93.588     High  
cufflinks 150.951     High  
cufflinks 87.175     High  
cufflinks 170.569     High  
cufflinks 74.932     High Low
cufflinks 192.882     High High

0 Strain