Gene : SNX2a A. thaliana TAIR10
Primary Identifier:  ? AT5G58440 Defline:  (1 of 2) PTHR10555//PTHR10555:SF155 - SORTING NEXIN // SUBFAMILY NOT NAMED
Genomic Order:  5335 Name:  ? AT5G58440
Secondary Identifier:  ? PAC:19669874
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT5G58440 0.5kb upstream 0.5kb upstream 3430 true Chr5: 23623858-23627287 Arabidopsis thaliana
AT5G58440 0.5kb upstream 0.5kb upstream 500 false Chr5: 23626788-23627287 Arabidopsis thaliana
AT5G58440 0.5kb downstream 0.5kb downstream 3430 true Chr5: 23623358-23626787 Arabidopsis thaliana
AT5G58440 0.5kb downstream 0.5kb downstream 500 false Chr5: 23623358-23623857 Arabidopsis thaliana
AT5G58440 1.0kb upstream 1.0kb upstream 3930 true Chr5: 23623858-23627787 Arabidopsis thaliana
AT5G58440 1.0kb upstream 1.0kb upstream 1000 false Chr5: 23626788-23627787 Arabidopsis thaliana
AT5G58440 1.0kb downstream 1.0kb downstream 3930 true Chr5: 23622858-23626787 Arabidopsis thaliana
AT5G58440 1.0kb downstream 1.0kb downstream 1000 false Chr5: 23622858-23623857 Arabidopsis thaliana
AT5G58440 2.0kb upstream 2.0kb upstream 4930 true Chr5: 23623858-23628787 Arabidopsis thaliana
AT5G58440 2.0kb upstream 2.0kb upstream 2000 false Chr5: 23626788-23628787 Arabidopsis thaliana
AT5G58440 2.0kb downstream 2.0kb downstream 4930 true Chr5: 23621858-23626787 Arabidopsis thaliana
AT5G58440 2.0kb downstream 2.0kb downstream 2000 false Chr5: 23621858-23623857 Arabidopsis thaliana
AT5G58440 5.0kb upstream 5.0kb upstream 7930 true Chr5: 23623858-23631787 Arabidopsis thaliana
AT5G58440 5.0kb upstream 5.0kb upstream 5000 false Chr5: 23626788-23631787 Arabidopsis thaliana
AT5G58440 5.0kb downstream 5.0kb downstream 7930 true Chr5: 23618858-23626787 Arabidopsis thaliana
AT5G58440 5.0kb downstream 5.0kb downstream 5000 false Chr5: 23618858-23623857 Arabidopsis thaliana
AT5G58440 10.0kb upstream 10.0kb upstream 12930 true Chr5: 23623858-23636787 Arabidopsis thaliana
AT5G58440 10.0kb upstream 10.0kb upstream 10000 false Chr5: 23626788-23636787 Arabidopsis thaliana
AT5G58440 10.0kb downstream 10.0kb downstream 12930 true Chr5: 23613858-23626787 Arabidopsis thaliana
AT5G58440 10.0kb downstream 10.0kb downstream 10000 false Chr5: 23613858-23623857 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041026 5273 Angiosperm View MSA
122367695 5261 Brassicaceae View MSA
123834028 5264 Brassicales-Malvales View MSA
124349642 5266 SBM View MSA
124237314 5268 Malvidae View MSA
124063344 5270 Rosid View MSA
123749355 5271 Pentapetalae View MSA
122789384 5272 Eudicot View MSA
121345182 5274 Embryophyte View MSA
123428162 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.369        
cufflinks 16.071        
cufflinks 12.546        
cufflinks 15.984        
cufflinks 12.079       Low
cufflinks 16.994       High

0 Strain